Peer Bork
Orcid: 0000-0002-2627-833XAffiliations:
- European Molecular Biology Laboratory, Heidelberg, Germany
According to our database1,
Peer Bork
authored at least 131 papers
between 1993 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on d-nb.info
On csauthors.net:
Bibliography
2023
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Nucleic Acids Res., January, 2023
Nucleic Acids Res., January, 2023
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
Nucleic Acids Res., January, 2023
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023
2022
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes.
Nucleic Acids Res., 2022
Bioinform., 2022
2021
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Nucleic Acids Res., 2021
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.
Nucleic Acids Res., 2021
OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.
Nucleic Acids Res., 2021
Nucleic Acids Res., 2021
2020
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.
Nucleic Acids Res., 2020
Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features.
Bioinform., 2020
2019
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Nucleic Acids Res., 2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019
Nucleic Acids Res., 2019
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res., 2019
2018
2017
PLoS Comput. Biol., 2017
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res., 2017
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.
Nucleic Acids Res., 2017
2016
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res., 2016
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.
Nucleic Acids Res., 2016
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res., 2016
2015
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Nat., 2015
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins.
Nucleic Acids Res., 2015
2014
Comments on "Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication".
PLoS Comput. Biol., 2014
Nucleic Acids Res., 2014
Nucleic Acids Res., 2014
2013
PLoS Comput. Biol., 2013
PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins.
Nucleic Acids Res., 2013
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Nucleic Acids Res., 2013
DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data.
Bioinform., 2013
2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
2011
PLoS Comput. Biol., 2011
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Res., 2011
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy.
Nucleic Acids Res., 2011
2010
SelTar<i>base</i>, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology.
Nucleic Acids Res., 2010
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res., 2010
Nucleic Acids Res., 2010
Bioinform., 2010
SmashCell: a software framework for the analysis of single-cell amplified genome sequences.
Bioinform., 2010
2009
STRING 8 - a global view on proteins and their functional interactions in 630 organisms.
Nucleic Acids Res., 2009
2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
Bioinform., 2008
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2007
Nucleic Acids Res., 2007
STRING 7 - recent developments in the integration and prediction of protein interactions.
Nucleic Acids Res., 2007
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.
Bioinform., 2007
2006
Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes.
PLoS Comput. Biol., 2006
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
Nucleic Acids Res., 2006
2005
PLoS Comput. Biol., 2005
STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
Nucleic Acids Res., 2005
DCD - a novel plant specific domain in proteins involved in development and programmed cell death.
BMC Bioinform., 2005
Comparison of computational methods for the identification of cell cycle-regulated genes.
Bioinform., 2005
Bioinform., 2005
2004
ArrayProspector: a web resource of functional associations inferred from microarray expression data.
Nucleic Acids Res., 2004
BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments.
Bioinform., 2004
Bioinform., 2004
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinform., 2004
Proceedings of the 42nd Annual Meeting of the Association for Computational Linguistics, 2004
2003
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
BMC Bioinform., 2003
The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.
BMC Bioinform., 2003
A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens.
Bioinform., 2003
2002
Nucleic Acids Res., 2002
HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources.
Nucleic Acids Res., 2002
J. Chem. Inf. Comput. Sci., 2002
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002
Comparative analysis of protein interaction networks.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
2000
Nucleic Acids Res., 2000
Nucleic Acids Res., 2000
1999
SMART: identification and annotation of domains from signalling and extracellular protein sequences.
Nucleic Acids Res., 1999
Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries.
Bioinform., 1999
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999
Proceedings of the Practical Aspects of Declarative Languages, 1999
1998
Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches.
Bioinform., 1998
Pathway alignment: Application in the comparative analysis of glycolysis.
Proceedings of the German Conference on Bioinformatics, 1998
1997
Towards detection of sequence orthologs.
Proceedings of the German Conference on Bioinformatics, 1997
Associative Data Base of Biomolecuiar Sequences.
Proceedings of the German Conference on Bioinformatics, 1997
Systematic genomic screening and analysis of mRNA in the 5' and 3' untranslated region.
Proceedings of the German Conference on Bioinformatics, 1997
1996
1995
The Functional Composition of Living Machines as a Design Principle for Artificial Organisms.
Proceedings of the Advances in Artificial Life, 1995
1994
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994
1993
Comput. Appl. Biosci., 1993
Entschlüsselung von Proteinfunktionen mit Hilfe des Computers: Erkennung und Interpretation entfernter Sequenzähnlichkeiten.
Proceedings of the Informatik in den Biowissenschaften, 1993