Pavel V. Baranov

According to our database, Pavel V. Baranov authored at least 18 papers between 1998 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.

Stephen J. Kiniry, Ciara E. Judge, Audrey M. Michel, Pavel V. Baranov

Nucleic Acids Res., 2021

2019

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data.

Stephen J. Kiniry, Patrick B. F. O'Connor, Audrey M. Michel, Pavel V. Baranov

Nucleic Acids Res., 2019

2018

GWIPS-viz: 2018 update.

Audrey M. Michel, Stephen J. Kiniry, Patrick B. F. O'Connor, James P. A. Mullan, Pavel V. Baranov

Nucleic Acids Res., 2018

Improving data workflow systems with cloud services and use of open data for bioinformatics research.

Md. Rezaul Karim, Audrey M. Michel, Achille Zappa, Pavel V. Baranov, Ratnesh Sahay, Dietrich Rebholz-Schuhmann

Briefings Bioinform., 2018

2014

GWIPS-viz: development of a ribo-seq genome browser.

Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov

Nucleic Acids Res., 2014

Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning.

Audrey M. Michel, Dmitry E. Andreev, Pavel V. Baranov

BMC Bioinform., 2014

2013

Darned in 2013: inclusion of model organisms and linking with Wikipedia.

Anmol M. Kiran, John J. O'Mahony, Komal Sanjeev, Pavel V. Baranov

Nucleic Acids Res., 2013

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences.

Ivan Antonov, Pavel V. Baranov, Mark Borodovsky

Nucleic Acids Res., 2013

rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.

Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov

Bioinform., 2013

2012

CodonLogo: a sequence logo-based viewer for codon patterns.

Virag Sharma, David P. Murphy, Gregory M. Provan, Pavel V. Baranov

Bioinform., 2012

2010

Recode-2: new design, new search tools, and many more genes.

Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov

Nucleic Acids Res., 2010

DARNED: a DAtabase of RNa EDiting in humans.

Anmol M. Kiran, Pavel V. Baranov

Bioinform., 2010

2008

Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs.

Michaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov

BMC Bioinform., 2008

2006

ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting.

Michaël Bekaert, John F. Atkins, Pavel V. Baranov

Bioinform., 2006

2003

RECODE 2003.

Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins

Nucleic Acids Res., 2003

2001

RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.

Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings

Nucleic Acids Res., 2001

1999

The Database of Ribosomal Cross-links: an update.

Pavel V. Baranov, Andrew V. Kubarenko, Olga L. Gurvich, Tatyana A. Shamolina, Richard Brimacombe

Nucleic Acids Res., 1999

1998

The Database of Ribosomal Cross links (DRC).

Pavel V. Baranov, Petr V. Sergiev, Olga A. Dontsova, Alexey A. Bogdanov, Richard Brimacombe

Nucleic Acids Res., 1998