Pavel Skums
Orcid: 0000-0003-4007-5624
According to our database1,
Pavel Skums
authored at least 71 papers
between 2005 and 2024.
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Bibliography
2024
Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes.
Proceedings of the Research in Computational Molecular Biology, 2024
2023
<i>Special Issue, Part 2</i> 18th International Symposium on Bioinformatics Research and Applications (ISBRA 2022).
J. Comput. Biol., September, 2023
<i>Special Issue, Part I</i> 18th International Symposium on Bioinformatics Research and Applications (ISBRA 2022).
J. Comput. Biol., August, 2023
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
J. Comput. Biol., April, 2023
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023
2022
Computational Approaches to Detect Illicit Drug Ads and Find Vendor Communities Within Social Media Platforms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
17th International Symposium on Bioinformatics Research and Applications (ISBRA 2021).
J. Comput. Biol., 2022
Primary case inference in viral outbreaks through analysis of intra-host variant population.
BMC Bioinform., 2022
SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework.
Proceedings of the Research in Computational Molecular Biology, 2022
2021
J. Comput. Biol., 2021
J. Comput. Biol., 2021
J. Comput. Biol., 2021
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).
J. Comput. Biol., 2021
Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020).
J. Comput. Biol., 2021
Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020).
J. Comput. Biol., 2021
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.
Briefings Bioinform., 2021
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021
2020
PLoS Comput. Biol., 2020
Preface Special Issue: 15th International Symposium on Bioinformatics Research and Applications (ISBRA 2019).
J. Comput. Biol., 2020
J. Complex Networks, 2020
Proceedings of the Computational Advances in Bio and Medical Sciences, 2020
Benchmarking of computational error-correction methods for next-generation sequencing data.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
2019
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Preface: 14th International Symposium on Bioinformatics Research and Applications (ISBRA 2018).
J. Comput. Biol., 2019
Graph fractal dimension and structure of fractal networks: a combinatorial perspective.
CoRR, 2019
Inference of clonal selection in cancer populations using single-cell sequencing data.
Bioinform., 2019
Proceedings of the Security, Privacy, and Anonymity in Computation, Communication, and Storage, 2019
Proceedings of the Security, Privacy, and Anonymity in Computation, Communication, and Storage, 2019
Proceedings of the Bioinformatics Research and Applications - 15th International Symposium, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
<i>Special Issue</i>Preface: 13th International Symposium on BioinformaticsResearch and Applications (ISBRA 2017).
J. Comput. Biol., 2018
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
BMC Bioinform., 2018
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinform., 2018
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2015
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform., 2015
Algorithms for prediction of viral transmission using analysis of intra-host viral populations.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
2014
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
New computational methods for assessing the genetic relatedness of close viral variants.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
2013
Discret. Math. Theor. Comput. Sci., 2013
<i>H</i>H-product of graphs, <i>H</i>H-threshold graphs and threshold-width of graphs.
Discret. Math., 2013
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform., 2013
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013
Optimizing pooling strategies for the massive next-generation sequencing of viral samples.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
2012
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response.
Silico Biol., 2012
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.
Silico Biol., 2012
BMC Bioinform., 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2007
Electron. Notes Discret. Math., 2007
Electron. Notes Discret. Math., 2007
2006
Electron. Notes Discret. Math., 2006
Electron. Notes Discret. Math., 2006
2005
Electron. Notes Discret. Math., 2005