Pavel P. Kuksa

Chien-Yueh Lee

Alexandre Amlie-Wolf

Prabhakaran Gangadharan

Elizabeth E. Mlynarski

Yi-Fan Chou

Han-Jen Lin

Heather Issen

Emily Greenfest-Allen

Otto Valladares

Yuk Yee Leung

Li-San Wang

Bioinform., 2020

2019

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.

[BibT_eX]

[DOI]

Bioinform., 2019

2018

SPAR: small RNA-seq portal for analysis of sequencing experiments.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2018

2016

DASHR: database of small human noncoding RNAs.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2016

2015

High-order neural networks and kernel methods for peptide-MHC binding prediction.

[BibT_eX]

[DOI]

Bioinform., 2015

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.

[BibT_eX]

[DOI]

Bioinform., 2015

2014

Efficient multivariate sequence classification.

[BibT_eX]

[DOI]

CoRR, 2014

2013

Biological Sequence Classification with Multivariate String Kernels.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012

Generalized Similarity Kernels for Efficient Sequence Classification.

[BibT_eX]

[DOI]

Imdadullah Khan

Proceedings of the Twelfth SIAM International Conference on Data Mining, 2012

Efficient evaluation of large sequence kernels.

[BibT_eX]

[DOI]

Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2012

2D similarity kernels for biological sequence classification.

[BibT_eX]

[DOI]

Proceedings of the 11th International Workshop on Data Mining in Bioinformatics, 2012

2011

Natural Language Processing (Almost) from Scratch.

[BibT_eX]

[DOI]

J. Mach. Learn. Res., 2011

2010

Efficient motif finding algorithms for large-alphabet inputs.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

Semi-supervised Bio-named Entity Recognition with Word-Codebook Learning.

[BibT_eX]

[DOI]

Yanjun Qi

Proceedings of the SIAM International Conference on Data Mining, 2010

Semi-supervised Abstraction-Augmented String Kernel for Multi-level Bio-Relation Extraction.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2010

Spatial Representation for Efficient Sequence Classification.

[BibT_eX]

[DOI]

Proceedings of the 20th International Conference on Pattern Recognition, 2010

2009

Efficient alignment-free DNA barcode analytics.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Efficient use of unlabeled data for protein sequence classification: a comparative study.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Semi-Supervised Sequence Labeling with Self-Learned Features.

[BibT_eX]

[DOI]

Proceedings of the ICDM 2009, 2009

Combining labeled and unlabeled data with word-class distribution learning.

[BibT_eX]

[DOI]

Proceedings of the 18th ACM Conference on Information and Knowledge Management, 2009

Fast Motif Selection for Biological Sequences.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008

Scalable Algorithms for String Kernels with Inexact Matching.

[BibT_eX]

[DOI]

Proceedings of the Advances in Neural Information Processing Systems 21, 2008

Fast protein homology and fold detection with sparse spatial sample kernels.

[BibT_eX]

[DOI]

Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

Fast Kernel Methods for SVM Sequence Classifiers.

[BibT_eX]

[DOI]