Pavel Demenkov

According to our database, Pavel Demenkov authored at least 15 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder.

Yulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek

J. Integr. Bioinform., December, 2024

Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection.

Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko

J. Integr. Bioinform., December, 2024

2021

The Web Platform for Storing Biotechnologically Significant Properties of Bacterial Strains.

Aleksey M. Mukhin, Fedor V. Kazantsev, Alexandra I. Klimenko, Tatiana N. Lakhova, Pavel S. Demenkov, Sergey A. Lashin

Proceedings of the Parallel Computing Technologies, 2021

2020

ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature.

Timofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostyanov, Vladimir A. Ivanisenko

BMC Bioinform., 2020

2019

A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression.

Vladimir A. Ivanisenko, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena L. Mishchenko, Olga V. Saik

BMC Bioinform., 2019

2018

Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature.

Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko

J. Integr. Bioinform., 2018

2017

SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes.

Irina V. Medvedeva, Pavel S. Demenkov, Vladimir A. Ivanisenko

J. Bioinform. Comput. Biol., 2017

2015

ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology.

Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov

BMC Syst. Biol., 2015

Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome).

Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko

BMC Syst. Biol., 2015

2014

Text Mining on PubMed.

Timofey V. Ivanisenko, Pavel S. Demenkov, Vladimir A. Ivanisenko

Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2013

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets.

Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt

J. Bioinform. Comput. Biol., 2013

2012

SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes.

Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko

Nucleic Acids Res., 2012

ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem.

Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko

Silico Biol., 2012

2010

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.

Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt

J. Integr. Bioinform., 2010

2007

Analysis of Protein Functional Site Distribution on Gene Structure.

Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007