Pavel A. Pevzner

Proceedings of the FSTTCS 2004: Foundations of Software Technology and Theoretical Computer Science, 2004

2003

Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited.

[BibT_eX]

[DOI]

Glenn Tesler

Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Engineering a scalable placement heuristic for DNA probe arrays.

[BibT_eX]

[DOI]

Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Genome-Wide Analysis of Bacterial Promoter Regions.

[BibT_eX]

[DOI]

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Reconstructing tumor genome architectures.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

Finding subtle motifs by branching from sample strings.

[BibT_eX]

Alkes L. Price

Sriram Ramabhadran

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

2002

Foreword.

[BibT_eX]

[DOI]

Ming Li

Ron Shamir

J. Comput. Syst. Sci., 2002

U Subtle motifs: defining the limits of motif finding algorithms.

[BibT_eX]

[DOI]

Uri Keich

Bioinform., 2002

Finding motifs in the twilight zone.

[BibT_eX]

[DOI]

Uri Keich

Bioinform., 2002

Border Length Minimization in DNA Array Design.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Finding Weak Motifs in DNA Sequences.

[BibT_eX]

[DOI]

Sing-Hoi Sze

Mikhail S. Gelfand

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

EULER-PCR: Finishing Experiments for Repeat Resolution.

[BibT_eX]

[DOI]

Zufar Mulyukov

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Splicing graphs and EST assembly problem.

[BibT_eX]

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

Finding composite regulatory patterns in DNA sequences.

[BibT_eX]

Eleazar Eskin

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001

The Complexity of Gene Placement.

[BibT_eX]

[DOI]

Süleyman Cenk Sahinalp

Elizabeth Sweedyk

J. Algorithms, 2001

A new approach to sequence comparison: normalized sequence alignment.

[BibT_eX]

[DOI]

Abdullah N. Arslan

Ömer Egecioglu

Bioinform., 2001

A new approach to fragment assembly in DNA sequencing.

[BibT_eX]

[DOI]

Haixu Tang

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Fragment assembly with double-barreled data.

[BibT_eX]

Haixu Tang

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

Mutation-Tolerant Protein Identification by Mass Spectrometry.

[BibT_eX]

[DOI]

Vlado Dancík

Chris L. Tang

J. Comput. Biol., 2000

Foreword.

[BibT_eX]

[DOI]

Sorin Istrail

Ron Shamir

Discret. Appl. Math., 2000

Combinatorial Approaches to Finding Subtle Signals in DNA Sequences.

[BibT_eX]

[DOI]

Sing-Hoi Sze

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

Computational molecular biology - an algorithmic approach.

[BibT_eX]

MIT Press, ISBN: 978-0-262-16197-8, 2000

1999

De Novo Peptide Sequencing via Tandem Mass Spectrometry.

[BibT_eX]

[DOI]

J. Comput. Biol., 1999

Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals.

[BibT_eX]

[DOI]

J. ACM, 1999

Fidelity Probes for DNA Arrays.

[BibT_eX]

[DOI]

Earl Hubbell

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Sorting by Transpositions.

[BibT_eX]

[DOI]

SIAM J. Discret. Math., 1998

Algorithms and software for support of gene identification experiments.

[BibT_eX]

[DOI]

Bioinform., 1998

SST versus EST in Gene Recognition (Invited Paper).

[BibT_eX]

[DOI]

Andrey A. Mironov

Proceedings of the String Processing and Information Retrieval: A South American Symposium, 1998

1997

Approximation Algorithms for Multiple Sequence Alignment.

[BibT_eX]

[DOI]

Eugene L. Lawler

Christos H. Papadimitriou

Theor. Comput. Sci., 1997

Emerging opportunities for theoretical computer science.

[BibT_eX]

[DOI]

SIGACT News, 1997

Selected Papers from RECOMB'97 - Preface.

[BibT_eX]

Sorin Istrail

J. Comput. Biol., 1997

Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment.

[BibT_eX]

[DOI]

Sing-Hoi Sze

J. Comput. Biol., 1997

Software for DNA sequencing by hybridization.

[BibT_eX]

[DOI]

I. Belyi

Comput. Appl. Biosci., 1997

Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes.

[BibT_eX]

Proceedings of the German Conference on Bioinformatics, 1997

1996

Genome Rearrangements and Sorting by Reversals.

[BibT_eX]

[DOI]

SIAM J. Comput., 1996

Positional sequencing by hybridization.

[BibT_eX]

[DOI]

Comput. Appl. Biosci., 1996

To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution).

[BibT_eX]

[DOI]

Proceedings of the Seventh Annual ACM-SIAM Symposium on Discrete Algorithms, 1996

Spliced Alignment: A New Approach to Gene Recognition.

[BibT_eX]

[DOI]

Mikhail S. Gelfand

Andrey A. Mironov

Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996

1995

DNASUN: a package of computer programs for the biotechnology laboratory.

[BibT_eX]

[DOI]

Comput. Appl. Biosci., 1995

Multiple Filtration and Approximate Pattern Matching.

[BibT_eX]

[DOI]

Algorithmica, 1995

DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs.

[BibT_eX]

[DOI]

Algorithmica, 1995

Sorting Permutations by Transpositions.

[BibT_eX]

[DOI]

Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995

Open Combinatorial Problems in Computational Molecular Biology.

[BibT_eX]

[DOI]

Proceedings of the Third Israel Symposium on Theory of Computing and Systems, 1995

Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem).

[BibT_eX]

[DOI]

Proceedings of the 36th Annual Symposium on Foundations of Computer Science, 1995

Towards a Computational Theory of Genome Rearrangements.

[BibT_eX]

[DOI]

Proceedings of the Computer Science Today: Recent Trends and Developments, 1995

1994

Rearrangements of DNA Sequences and SBH.

[BibT_eX]

[DOI]

Comput. Chem., 1994

Towards DNA Sequencing Chips.

[BibT_eX]

[DOI]

Robert J. Lipshutz

Proceedings of the Mathematical Foundations of Computer Science 1994, 1994

Parametric Recomuting in Alignment Graphs.

[BibT_eX]

[DOI]

Xiaoqiu Huang

Webb Miller

Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

1993

Multiple Sequence Comparison and n-Dimensional Image Reconstruction.

[BibT_eX]

[DOI]

Martin Vingron

Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

A Fast Filtration Algorithm for the Substring Matching Problem.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1992

Nucleotide Sequences Versus Markov Models.

[BibT_eX]

[DOI]

Comput. Chem., 1992

Statistical distance between texts and filtration methods in sequence comparison.

[BibT_eX]

[DOI]

Comput. Appl. Biosci., 1992

Extendable words in nucleotide sequences.

[BibT_eX]

[DOI]

Mikhail S. Gelfand

C. G. Kozhukhin

Comput. Appl. Biosci., 1992

DNA Physical Mapping, Flows in Networks and Minimum Cycles Mean in Graphs.

[BibT_eX]

[DOI]

Proceedings of the Mathematical Methods Of Analysis Of Biopolymer Sequences, 1992

Matrix Longest Common Subsequence Problem, Duality and Hibert Bases.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992

Multiple Alignment with Guaranteed Error Bounds and Communication Cost.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992

1991

Genome inhomogeneity is determined mainly by WW and SS dinucleotides.

[BibT_eX]

[DOI]

C. G. Kozhukhin