Paulo Sérgio Lopes-de-Oliveira

According to our database, Paulo Sérgio Lopes-de-Oliveira authored at least 6 papers between 2020 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2024

Exploring the potential of structure-based deep learning approaches for T cell receptor design.

Helder Veras Ribeiro filho, Gabriel Ernesto Jara, João Victor da Silva Guerra, Melyssa Cheung, Nathaniel R. Felbinger, José Geraldo de Carvalho Pereira, Brian G. Pierce, Paulo Sérgio Lopes-de-Oliveira

PLoS Comput. Biol., 2024

2023

KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities.

João Victor da Silva Guerra, Helder Veras Ribeiro filho, José Geraldo de Carvalho Pereira, Paulo Sérgio Lopes-de-Oliveira

Nucleic Acids Res., July, 2023

Cavity Characterization in Supramolecular Cages.

João Victor da Silva Guerra, Luiz F. G. Alves, Didier Bourissou, Paulo Sérgio Lopes-de-Oliveira, György Szalóki

J. Chem. Inf. Model., June, 2023

2022

Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding.

Helder Veras Ribeiro filho, Gabriel Ernesto Jara, Fernanda Aparecida Heleno Batista, Gabriel Ravanhani Schleder, Celisa Caldana Costa Tonoli, Adriana Santos Soprano, Samuel Leite Guimarães, Antonio Carlos Borges, Alexandre Cassago, Marcio Chaim Bajgelman, Rafael Elias Marques, Daniela Barretto Barbosa Trivella, Kleber Gomes Franchini, Ana Carolina Migliorini Figueira, Celso Eduardo Benedetti, Paulo Sérgio Lopes-de-Oliveira

PLoS Comput. Biol., 2022

2021

pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science.

João Victor da Silva Guerra, Helder Veras Ribeiro filho, Gabriel Ernesto Jara, Leandro Oliveira Bortot, José Geraldo de Carvalho Pereira, Paulo Sérgio Lopes-de-Oliveira

BMC Bioinform., 2021

2020

ParKVFinder: A thread-level parallel approach in biomolecular cavity detection.

João Victor da Silva Guerra, Helder Veras Ribeiro filho, Leandro Oliveira Bortot, Rodrigo Vargas Honorato, José Geraldo de Carvalho Pereira, Paulo Sérgio Lopes-de-Oliveira

SoftwareX, 2020