Paula M. Mabee
Orcid: 0000-0002-8455-3213
According to our database1,
Paula M. Mabee
authored at least 24 papers
between 2008 and 2024.
Collaborative distances:
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Bibliography
2024
What Do You See in Common? Learning Hierarchical Prototypes over Tree-of-Life to Discover Evolutionary Traits.
CoRR, 2024
VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images.
CoRR, 2024
Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution.
CoRR, 2024
Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images.
CoRR, 2024
2023
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks.
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023
2020
Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities.
BMC Bioinform., 2020
Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species.
Proceedings of the Metadata and Semantic Research - 14th International Conference, 2020
2019
Nat., 2019
2018
Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology.
Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
Database J. Biol. Databases Curation, 2018
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018
2017
A generic bioinformatics pipeline to integrate large-scale trait data with large phylogenies.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2015
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.
Database J. Biol. Databases Curation, 2015
Proceedings of the Information Science with Impact: Research in and for the Community, 2015
2014
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
J. Biomed. Semant., 2014
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.
J. Biomed. Semant., 2014
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.
J. Biomed. Semant., 2014
2013
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.
J. Biomed. Semant., 2013
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation, 2013
2011
Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration.
Proceedings of the First International Workshop on Linked Science 2011, 2011
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
2008
Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008