Paul A. Clemons

According to our database, Paul A. Clemons authored at least 13 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Machine Learning on DNA-Encoded Library Count Data Using an Uncertainty-Aware Probabilistic Loss Function.

Katherine S. Lim, Andrew G. Reidenbach, Bruce K. Hua, Jeremy W. Mason, Christopher J. Gerry, Paul A. Clemons, Connor W. Coley

J. Chem. Inf. Model., 2022

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science.

Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman, Jennifer J. Hadlock, Nomi L. Harris, Arpita Joshi, Tim E. Putman, Guangrong Qin, Stephen A. Ramsey, Kent A. Shefchek, Harold Solbrig, Karthik Soman, Anne E. Thessen, Melissa A. Haendel, Chris Bizon, Christopher J. Mungall

CoRR, 2022

2018

RWEN: response-weighted elastic net for prediction of chemosensitivity of cancer cell lines.

Amrita Basu, Ritwik Mitra, Han Liu, Stuart L. Schreiber, Paul A. Clemons

Bioinform., 2018

2017

CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network.

Bülent Arman Aksoy, Vlado Dancík, Kenneth Smith, Jessica N. Mazerik, Zhou Ji, Benjamin E. Gross, Olga Nikolova, Nadia Jaber, Andrea Califano, Stuart L. Schreiber, Daniela S. Gerhard, Leandro Hermida, Subhashini Jagu, Chris Sander, Aris Floratos, Paul A. Clemons

Database J. Biol. Databases Curation, 2017

Differential Pathway Dependency Discovery Associated with Drug Response across Cancer Cell Lines.

Gil Speyer, Divya Mahendra, Hai J. Tran, Jeff Kiefer, Stuart L. Schreiber, Paul A. Clemons, Harshil Dhruv, Michael E. Berens, Seungchan Kim

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2015

BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types.

E. A. Howe, Andrea de Souza, David L. Lahr, S. Chatwin, Philip Montgomery, B. R. Alexander, Dac-Trung Nguyen, Yasel Cruz, D. A. Stonich, G. Walzer, J. T. Rose, Shaita C. Picard, Zihan Liu, Jamie N. Rose, X. Xiang, Jacob K. Asiedu, D. Durkin, J. Levine, J. J. Yang, Stephan C. Schürer, John C. Braisted, Noel Southall, Mark R. Southern, T. D. Y. Chung, Steve Brudz, C. Tanega, Stuart L. Schreiber, Joshua A. Bittker, Rajarshi Guha, Paul A. Clemons

Nucleic Acids Res., 2015

2014

Evolving BioAssay Ontology (BAO): modularization, integration and applications.

Saminda Abeyruwan, Uma D. Vempati, Hande Küçük-McGinty, Ubbo Visser, Amar Koleti, Ahsan Mir, Kunie Sakurai, Caty Chung, Joshua A. Bittker, Paul A. Clemons, Steve Brudz, Anosha Siripala, Arturo J. Morales, Martin Romacker, David Twomey, Svetlana Bureeva, Vance P. Lemmon, Stephan C. Schürer

J. Biomed. Semant., 2014

2013

An informatic pipeline for managing high-throughput screening experiments and analyzing data from stereochemically diverse libraries.

Carol A. Mulrooney, David L. Lahr, Michael J. Quintin, Willmen Youngsaye, Dennis Moccia, Jacob K. Asiedu, Evan L. Mulligan, Lakshmi B. Akella, Lisa A. Marcaurelle, Philip Montgomery, Joshua A. Bittker, Paul A. Clemons, Steve Brudz, Sivaraman Dandapani, Jeremy R. Duvall, Nicola J. Tolliday, Andrea de Souza

J. Comput. Aided Mol. Des., 2013

2012

Utility-Aware Screening with Clique-Oriented Prioritization.

S. Joshua Swamidass, Bradley T. Calhoun, Joshua A. Bittker, Nicole E. Bodycombe, Paul A. Clemons

J. Chem. Inf. Model., 2012

2011

Enhancing the rate of scaffold discovery with diversity-oriented prioritization.

Sanjay Joshua Swamidass, Bradley T. Calhoun, Joshua A. Bittker, Nicole E. Bodycombe, Paul A. Clemons

Bioinform., 2011

2009

Alpha Shapes Applied to Molecular Shape Characterization Exhibit Novel Properties Compared to Established Shape Descriptors.

J. Anthony Wilson, Andreas Bender, Taner Kaya, Paul A. Clemons

J. Chem. Inf. Model., 2009

2008

<i>ChemBank</i>: a small-molecule screening and cheminformatics resource database.

Kathleen Petri Seiler, Gregory A. George, Mary Pat Happ, Nicole E. Bodycombe, Hyman A. Carrinski, Stephanie Norton, Steve Brudz, John P. Sullivan, Jeremy Muhlich, Martin Serrano, Paul Ferraiolo, Nicola J. Tolliday, Stuart L. Schreiber, Paul A. Clemons

Nucleic Acids Res., 2008

2005

SpectralNET - an application for spectral graph analysis and visualization.

Joshua J. Forman, Paul A. Clemons, Stuart L. Schreiber, Stephen J. Haggarty

BMC Bioinform., 2005