Patryk Burek

According to our database, Patryk Burek authored at least 27 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Ontologically Founded Design Patterns for Situation Modeling.

Patryk Burek, Frank Loebe, Ralph Schäfermeier, Alexandr Uciteli, Bartosz Kondracki, Heinrich Herre

Proceedings of the Harnessing Opportunities: Reshaping ISD in the post-COVID-19 and Generative AI Era (ISD2024 Proceedings), 2024

2023

Balls and Universal Space in GFO.

Bärbel Hanle, Frank Loebe, Patryk Burek, Heinrich Herre

Proceedings of the Joint Ontology Workshops 2023 Episode IX: The Quebec Summer of Ontology co-located with the 13th International Conference on Formal Ontology in Information Systems (FOIS 2023), 2023

Ontology patterns for function modeling with GFO (short paper).

Patryk Burek, Frank Loebe, Heinrich Herre

Proceedings of the Companion Proceedings of the 42nd International Conference on Conceptual Modeling: ER Forum, 2023

2022

GFO: The General Formal Ontology.

Frank Loebe, Patryk Burek, Heinrich Herre

Appl. Ontology, 2022

2021

Cybersecurity Ontology for Dynamic Analysis of IT Systems.

Jakub Pastuszuk, Patryk Burek, Bogdan Ksiezopolski

Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 25th International Conference KES-2021, 2021

Overview of GFO 2.0 Functions: An ontology module for representing teleological knowledge.

Patryk Burek, Frank Loebe, Heinrich Herre

Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 25th International Conference KES-2021, 2021

Developing GFO 2.0 Further - Initiating the Modules of Space and Material Objects.

Frank Loebe, Patryk Burek, Heinrich Herre

Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

2020

Towards a Modern Ontology Development Environment.

Adrian Stadnicki, Filip Filip Pietron, Patryk Burek

Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 24th International Conference KES-2020, 2020

A Lightweight Approach to the Multi-perspective Modeling of Processes and Objects.

Patryk Burek, Heinrich Herre

Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 24th International Conference KES-2020, 2020

On the Ontological Foundations of Cellular Development.

Patryk Burek, Heinrich Herre, Nico Scherf

Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020), 2020

Towards GFO 2.0: Architecture, Modules and Applications.

Patryk Burek, Frank Loebe, Heinrich Herre

Proceedings of the Formal Ontology in Information Systems, 2020

On the Formal Representation and Annotation of Cellular Genealogies.

Patryk Burek, Nico Scherf, Heinrich Herre

Proceedings of the Knowledge Engineering and Knowledge Management, 2020

2019

Ontology patterns for the representation of quality changes of cells in time.

Patryk Burek, Nico Scherf, Heinrich Herre

J. Biomed. Semant., 2019

A pattern-based approach to a cell tracking ontology.

Patryk Burek, Nico Scherf, Heinrich Herre

Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 23rd International Conference KES-2019, 2019

Foundations of the Cell Tracking Ontology.

Patryk Burek, Nico Scherf, Heinrich Herre

Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

2017

Towards refactoring the Molecular Function Ontology with a UML profile for function modeling.

Patryk Burek, Frank Loebe, Heinrich Herre

J. Biomed. Semant., 2017

2016

FueL: Representing function structure and function dependencies with a UML profile for function modeling.

Patryk Burek, Frank Loebe, Heinrich Herre

Appl. Ontology, 2016

2015

A UML profile for functional modeling applied to the Molecular Function Ontology.

Patryk Burek, Frank Loebe, Heinrich Herre

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

Search Ontology, a new approach towards Semantic Search.

Alexandr Uciteli, Christoph Goller, Patryk Burek, Sebastian Siemoleit, Breno Faria, Halyna Galanzina, Timo Weiland, Doreen Drechsler-Hake, Wolfram Bartussek, Heinrich Herre

Proceedings of the 44. Jahrestagung der Gesellschaft für Informatik, Big Data, 2014

2013

Representation, Realization, and Ascription of Functions for Material Entities.

Patryk Burek, Heinrich Herre

Proceedings of the 43. Jahrestagung der Gesellschaft für Informatik, 2013

Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking.

Nico Scherf, Michael Kunze, Konstantin Thierbach, Thomas Zerjatke, Patryk Burek, Heinrich Herre, Ingmar Glauche, Ingo Roeder

Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013

2009

Ontological Analysis of Functional Decomposition.

Patryk Burek, Heinrich Herre, Frank Loebe

Proceedings of the New Trends in Software Methodologies, Tools and Techniques, 2009

2006

Ontology of functions: a domain independent framework for modeling functions.

Patryk Burek

PhD thesis, 2006

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

Patryk Burek, Robert Hoehndorf, Frank Loebe, Johann Visagie, Heinrich Herre, Janet Kelso

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005

Essentialized Conceptual Structures in Ontology Modeling.

Patryk Burek

Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2005

Dually Structured Concepts in the Semantic Web: Answer Set Programming Approach.

Patryk Burek, Rafal Grabos

Proceedings of the Semantic Web: Research and Applications, 2005

2004

Adoption of the Classical Theory of Definition to Ontology Modeling.

Patryk Burek

Proceedings of the Artificial Intelligence: Methodology, 2004