Patrick S. G. Chain

According to our database, Patrick S. G. Chain authored at least 9 papers between 2003 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.

Chien-Chi Lo, Migun Shakya, Ryan Connor, Karen Davenport, Mark Flynn, Adán Myers y Gutiérrez, Bin Hu, Po-E Li, Elais Player Jackson, Yan Xu, Patrick S. G. Chain

Bioinform., 2022

2021

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.

Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Fnu Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais Player Jackson, Julia Kelliher, Po-E Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain

Frontiers Bioinform., 2021

A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays.

Po-E Li, Adán Myers y Gutiérrez, Karen Davenport, Mark Flynn, Bin Hu, Chien-Chi Lo, Elais Player Jackson, Migun Shakya, Yan Xu, Jason D. Gans, Patrick S. G. Chain

Bioinform., 2021

Leveraging Ontologies within the National Microbiome Data Collaborative.

William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2016

ADEPT, a dynamic next generation sequencing data error-detection program with trimming.

Shihai Feng, Chien-Chi Lo, Po-E Li, Patrick S. G. Chain

BMC Bioinform., 2016

2014

Rapid evaluation and quality control of next generation sequencing data with FaQCs.

Chien-Chi Lo, Patrick S. G. Chain

BMC Bioinform., 2014

2006

Array2BIO: from microarray expression data to functional annotation of co-regulated genes.

Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko

BMC Bioinform., 2006

Finishing Repetitive Regions Automatically with Dupfinisher.

Cliff Han, Patrick S. G. Chain

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

2003

An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges.

Patrick S. G. Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak

Briefings Bioinform., 2003