Parag Mallick

According to our database, Parag Mallick authored at least 17 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Prospector Heads: Generalized Feature Attribution for Large Models & Data.

Gautam Machiraju, Alexander Derry, Arjun D. Desai, Neel Guha, Amir-Hossein Karimi, James Zou, Russ B. Altman, Christopher Ré, Parag Mallick

Proceedings of the Forty-first International Conference on Machine Learning, 2024

2023

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images.

Grigorios M. Karageorgos, Sanghee Cho, Elizabeth McDonough, Chrystal Chadwick, Soumya Ghose, Jonathan Owens, Kyeong Joo Jung, Raghu Machiraju, Robert West, James D. Brooks, Parag Mallick, Fiona Ginty

Frontiers Bioinform., May, 2023

2022

A Dataset Generation Framework for Evaluating Megapixel Image Classifiers and Their Explanations.

Gautam Machiraju, Sylvia K. Plevritis, Parag Mallick

Proceedings of the Computer Vision - ECCV 2022, 2022

2020

ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network.

Michelle B. Atallah, Varun Tandon, Kamir J. Hiam, Hunter Boyce, Michelle Hori, Waleed Atallah, Matthew H. Spitzer, Edgar Engleman, Parag Mallick

BMC Bioinform., 2020

PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms usingproteogenomics.

Arunima Srivastava, Michael F. Sharpnack, Kun Huang, Parag Mallick, Raghu Machiraju

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.

Arunima Srivastava, Ravali Adusumilli, Hunter Boyce, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Thomas Yu, Raghu Machiraju, Yolanda Gil, Parag Mallick

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Geostatistical visualization of ecological interactions in tumors.

Hunter Boyce, Parag Mallick

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

A Bayesian Active Learning Experimental Design for Inferring Signaling Networks.

Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek

J. Comput. Biol., 2018

Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles.

Arunima Srivastava, Chaitanya Kulkarni, Parag Mallick, Kun Huang, Raghu Machiraju

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017

Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions.

Yolanda Gil, Daniel Garijo, Margaret Knoblock, Alyssa Deng, Ravali Adusumilli, Varun Ratnakar, Parag Mallick

Proceedings of Workshops and Tutorials of the 9th International Conference on Knowledge Capture (K-CAP2017), 2017

Towards Continuous Scientific Data Analysis and Hypothesis Evolution.

Yolanda Gil, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Ravali Adusumilli, Hunter Boyce, Arunima Srivastava, Parag Mallick

Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence, 2017

2015

<i>Cardinal</i>: an R package for statistical analysis of mass spectrometry-based imaging experiments.

Kyle D. Bemis, April Harry, Livia S. Eberlin, Christina Ferreira, Stephanie M. van de Ven, Parag Mallick, Mark L. Stolowitz, Olga Vitek

Bioinform., 2015

2012

Semi-automatically Mapping Structured Sources into the Semantic Web.

Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite, Aman Goel, Shubham Gupta, Kristina Lerman, Maria Muslea, Mohsen Taheriyan, Parag Mallick

Proceedings of the Semantic Web: Research and Applications, 2012

2011

Interactively Mapping Data Sources into the Semantic Web.

Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite, Shubham Gupta, Aman Goel, Maria Muslea, Kristina Lerman, Parag Mallick

Proceedings of the First International Workshop on Linked Science 2011, 2011

2008

ProteoWizard: open source software for rapid proteomics tools development.

Darren Kessner, Matt Chambers, Robert Burke, David B. Agus, Parag Mallick

Bioinform., 2008

2006

The PeptideAtlas project.

Frank Desiere, Eric W. Deutsch, Nichole L. King, Alexey I. Nesvizhskii, Parag Mallick, Jimmy K. Eng, Sharon Chen, James Eddes, Sandra N. Loevenich, Ruedi Aebersold

Nucleic Acids Res., 2006

2005

Finding Protein Domain Boundaries: An Automated, Non-Homology-Based Method.

Brian M. Gurbaxani, Parag Mallick

IEEE Intell. Syst., 2005