Paolo Di Tommaso

According to our database, Paolo Di Tommaso authored at least 15 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

Workflows Community Summit 2022: A Roadmap Revolution.

Rafael Ferreira da Silva, Rosa M. Badia, Venkat Bala, Debbie Bard, Peer-Timo Bremer, Ian Buckley, Silvina Caíno-Lores, Kyle Chard, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Manish Parashar, Frédéric Suter, Nick Tyler, Thomas D. Uram, Ilkay Altintas, Stefan Andersson, William Arndt, Juan Aznar, Jonathan Bader, Bartosz Balis, Chris Blanton, Kelly Rosa Braghetto, Aharon Brodutch, Paul Brunk, Henri Casanova, Alba Cervera-Lierta, Justin Chigu, Tainã Coleman, Nick Collier, Iacopo Colonnelli, Frederik Coppens, Michael R. Crusoe, Will Cunningham, Bruno de Paula Kinoshita, Paolo Di Tommaso, Charles M. Doutriaux, Matthew Downton, Wael R. Elwasif, Bjoern Enders, Chris Erdmann, Thomas Fahringer, Ludmilla Figueiredo, Rosa Filgueira, Martin Foltin, Anne Fouilloux, Luiz Gadelha, Andy Gallo, Artur García-Sáez, et al.

CoRR, 2023

2021

Approaches for containerized scientific workflows in cloud environments with applications in life science.

Ola Spjuth, Marco Capuccini, Matteo Carone, Anders Larsson, Wesley Schaal, Jon Ander Novella, Oliver Stein, Morgan Ekmefjord, Paolo Di Tommaso, Evan W. Floden, Cédric Notredame, Pablo A. Moreno, Andreas Hellander, Payam Emami Khoonsari, Stephanie Herman, Kim Kultima, Samuel Lampa

F1000Research, 2021

Workflows Community Summit: Bringing the Scientific Workflows Community Together.

Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong H. Ahn, Shantenu Jha, Carole A. Goble, Lavanya Ramakrishnan, J. Luc Peterson, Bjoern Enders, Douglas Thain, Ilkay Altintas, Yadu N. Babuji, Rosa M. Badia, Vivien Bonazzi, Tainã Coleman, Michael R. Crusoe, Ewa Deelman, Frank Di Natale, Paolo Di Tommaso, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Alex Ganose, Björn A. Grüning, Daniel S. Katz, Olga A. Kuchar, Ana Kupresanin, Bertram Ludäscher, Ketan Maheshwari, Marta Mattoso, Kshitij Mehta, Todd S. Munson, Jonathan Ozik, Tom Peterka, Loic Pottier, Tim Randles, Stian Soiland-Reyes, Benjamín Tovar, Matteo Turilli, Thomas D. Uram, Karan Vahi, Michael Wilde, Matthew Wolf, Justin M. Wozniak

CoRR, 2021

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.

Jia-Ming Chang, Evan W. Floden, Javier Herrero, Olivier Gascuel, Paolo Di Tommaso, Cédric Notredame

Bioinform., 2021

2018

Nextflow integration for the Research Object Specification.

Edgar Garriga Nogales, Paolo Di Tommaso, Cédric Notredame

Proceedings of Workshop on Research Objects (RO2018), 2018

2016

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.

Evan W. Floden, Paolo Di Tommaso, Maria Chatzou, Cedrik Magis, Cédric Notredame, Jia-Ming Chang

Nucleic Acids Res., 2016

2015

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.

Jia-Ming Chang, Paolo Di Tommaso, Vincent Lefort, Olivier Gascuel, Cédric Notredame

Nucleic Acids Res., 2015

2014

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.

Paolo Di Tommaso, Giovanni Bussotti, Carsten Kemena, Emidio Capriotti, Maria Chatzou, Pablo Prieto, Cédric Notredame

Nucleic Acids Res., 2014

2013

T-RMSD: a web server for automated fine-grained protein structural classification.

Cedrik Magis, Paolo Di Tommaso, Cédric Notredame

Nucleic Acids Res., 2013

2012

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.

Jia-Ming Chang, Paolo Di Tommaso, Jean-François Taly, Cédric Notredame

BMC Bioinform., 2012

AMPA: an automated web server for prediction of protein antimicrobial regions.

Marc Torrent, Paolo Di Tommaso, David Pulido, Victòria M. Nogués, Cédric Notredame, Ester Boix, David Andreu

Bioinform., 2012

2011

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.

Paolo Di Tommaso, Sébastien Moretti, Ioannis Xenarios, Miquel Orobitg, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame

Nucleic Acids Res., 2011

2010

Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud.

Paolo Di Tommaso, Miquel Orobitg, Fernando Guirado, Fernando Cores, Toni Espinosa, Cédric Notredame

Bioinform., 2010

2004

Definition of visual processes in a language for expressing transitions.

Paolo Bottoni, Maria De Marsico, Paolo Di Tommaso, Stefano Levialdi, Domenico Ventriglia

J. Vis. Lang. Comput., 2004

2002

Un linguaggio per esprimere transizioni.

Paolo Bottoni, Maria De Marsico, Paolo Di Tommaso, Stefano Levialdi, Domenico Ventriglia

Proceedings of the WOA 2002: Dagli Oggetti agli Agenti. 3rd AI*IA/TABOO Joint Workshop "From Objects to Agents": From Information to Knowledge, 2002