Paola Paci

Orcid: 0000-0002-9393-2047

According to our database1, Paola Paci authored at least 28 papers between 2008 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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2010
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2018
2020
2022
2024
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Links

On csauthors.net:

Bibliography

2024
Beyond the network-based multi-omics data integration in COPD: a pathway-centric analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Unveiling drug-induced side effects through network-based analysis: an update.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Differential gene correlation analysis to investigate evolutionary divergence between Cardamine hirsuta and Arabidopsis thaliana.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

A network-based bioinformatic analysis for identifying potential repurposable drugs for obesity avoiding hepatic steatosis side-effect.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

2023
Overview of bioinformatic tools to study viral infections.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

A single-cell transcriptomic analysis of Neuroblastomas revealed a selective cGAS-STING pathway suppression in malignant cells.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Network-based analysis to uncover drug-induced adverse side-effects.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

A network-based bioinformatic analysis for identifying potential repurposable active molecules in different types of human cancers.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes.
Symmetry, 2022

Mining sponge phenomena in RNA expression data.
J. Bioinform. Comput. Biol., 2022

SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks.
BMC Bioinform., 2022

StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition.
BMC Bioinform., 2022

SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks.
Bioinform., 2022

2021
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.
PLoS Comput. Biol., 2021

Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in Italy.
Comput. Biol. Medicine, 2021

SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups.
Comput. Biol. Medicine, 2021

Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19.
Comput. Biol. Medicine, 2021

SAveRUNNER: an R-based tool for drug repurposing.
BMC Bioinform., 2021

2019
Network Inference and Reconstruction in Bioinformatics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis.
BMC Bioinform., 2019

2014
Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions.
J. Chem. Inf. Model., 2014

Modules Identification in Protein Structures: The Topological and Geometrical Solutions.
J. Chem. Inf. Model., 2014

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer.
BMC Syst. Biol., 2014

2012
Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay.
PLoS Comput. Biol., 2012

Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles.
J. Chem. Inf. Model., 2012

2009
Modeling lymphocyte homing and encounters in lymph nodes.
BMC Bioinform., 2009

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings Bioinform., 2009

2008
A Discrete/Continuous Model of Anti-HIV Response and Therapy.
Proceedings of the 10th EUROS/UKSim International Conference on Computer Modelling and Simulation, 2008


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