Pak Chung Sham

According to our database, Pak Chung Sham authored at least 36 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Estimation of causal effects of genes on complex traits using a Bayesian-network-based framework applied to GWAS data.

Liangying Yin, Yaning Feng, Yujia Shi, Alexandria Lau, Jinghong Qiu, Pak Chung Sham, Hon-Cheong So

Nat. Mac. Intell., 2024

2023

Inferring CTCF-binding patterns and anchored loops across human tissues and cell types.

Hang Xu, Xianfu Yi, Xutong Fan, Chengyue Wu, Wei Wang, Xinlei Chu, Shijie Zhang, Xiaobao Dong, Zhao Wang, Jianhua Wang, Yao Zhou, Ke Zhao, Hongcheng Yao, Nan Zheng, Junwen Wang, Yupeng Chen, Dariusz Plewczynski, Pak Chung Sham, Kexin Chen, Dandan Huang, Mulin Jun Li

Patterns, August, 2023

2022

VannoPortal: multiscale functional annotation of human genetic variants for interrogating molecular mechanism of traits and diseases.

Dandan Huang, Yao Zhou, Xianfu Yi, Xutong Fan, Jianhua Wang, Hongcheng Yao, Pak Chung Sham, Jihui Hao, Kexin Chen, Mulin Jun Li

Nucleic Acids Res., 2022

2021

A framework to decipher the genetic architecture of combinations of complex diseases: applications in cardiovascular medicine.

Liangying Yin, Carlos Kwan-Long Chau, Yu-Ping Lin, Shitao Rao, Yong Xiang, Pak Chung Sham, Hon-Cheong So

Bioinform., November, 2021

vSampler: fast and annotation-based matched variant sampling tool.

Dandan Huang, Zhao Wang, Yao Zhou, Qian Liang, Pak Chung Sham, Hongcheng Yao, Mulin Jun Li

Bioinform., 2021

2020

QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes.

Zhanye Zheng, Dandan Huang, Jianhua Wang, Ke Zhao, Yao Zhou, Zhenyang Guo, Sinan Zhai, Hang Xu, Hui Cui, Hongcheng Yao, Zhao Wang, Xianfu Yi, Shijie Zhang, Pak Chung Sham, Mulin Jun Li

Nucleic Acids Res., 2020

CAUSALdb: a database for disease/trait causal variants identified using summary statistics of genome-wide association studies.

Jianhua Wang, Dandan Huang, Yao Zhou, Hongcheng Yao, Huanhuan Liu, Sinan Zhai, Chengwei Wu, Zhanye Zheng, Ke Zhao, Zhao Wang, Xianfu Yi, Shijie Zhang, Xiaorong Liu, Zipeng Liu, Kexin Chen, Ying Yu, Pak Chung Sham, Mulin Jun Li

Nucleic Acids Res., 2020

Methods and resources to access mutation-dependent effects on cancer drug treatment.

Hongcheng Yao, Qian Liang, Xinyi Qian, Junwen Wang, Pak Chung Sham, Mulin Jun Li

Briefings Bioinform., 2020

2019

A powerful conditional gene-based association approach implicated functionally important genes for schizophrenia.

Miao-Xin Li, Lin Jiang, Timothy Shin Heng Mak, Johnny S. H. Kwan, Chao Xue, Peikai Chen, Henry Chi-Ming Leung, Liqian Cui, Tao Li, Pak Chung Sham

Bioinform., 2019

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data.

Shun H. Yip, Pak Chung Sham, Junwen Wang

Briefings Bioinform., 2019

2018

GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits.

Dandan Huang, Xianfu Yi, Shijie Zhang, Zhanye Zheng, Panwen Wang, Chenghao Xuan, Pak Chung Sham, Junwen Wang, Mulin Jun Li

Nucleic Acids Res., 2018

A powerful approach reveals numerous expression quantitative trait haplotypes in multiple tissues.

Dingge Ying, Mulin Jun Li, Pak Chung Sham, Miao-Xin Li

Bioinform., 2018

2017

mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.

Mulin Jun Li, Hongcheng Yao, Dandan Huang, Huanhuan Liu, Zipeng Liu, Hang Xu, Yiming Qin, Jeanette Prinz, Weiyi Xia, Panwen Wang, Bin Yan, Nhan L. Tran, Jean-Pierre A. Kocher, Pak Chung Sham, Junwen Wang

Nucleic Acids Res., 2017

2016

GWASdb v2: an update database for human genetic variants identified by genome-wide association studies.

Mulin Jun Li, Zipeng Liu, Panwen Wang, Maria P. Wong, Matthew R. Nelson, Jean-Pierre A. Kocher, Meredith Yeager, Pak Chung Sham, Stephen J. Chanock, Zhengyuan Xia, Junwen Wang

Nucleic Acids Res., 2016

Predicting regulatory variants with composite statistic.

Mulin Jun Li, Zhicheng Pan, Zipeng Liu, Jiexing Wu, Panwen Wang, Yun Zhu, Feng Xu, Zhengyuan Xia, Pak Chung Sham, Jean-Pierre A. Kocher, Miao-Xin Li, Jun S. Liu, Junwen Wang

Bioinform., 2016

Inheritance-mode specific pathogenicity prioritization (ISPP) for human protein coding genes.

Jacob Shujui Hsu, Johnny S. H. Kwan, Zhicheng Pan, Maria-Mercè Garcia-Barcelo, Pak Chung Sham, Miao-Xin Li

Bioinform., 2016

2015

MGAS: a powerful tool for multivariate gene-based genome-wide association analysis.

Sophie Van der Sluis, Conor V. Dolan, Jiang Li, You-Qiang Song, Pak Chung Sham, Danielle Posthuma, Miao-Xin Li

Bioinform., 2015

Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression.

Mulin Jun Li, Bin Yan, Pak Chung Sham, Junwen Wang

Briefings Bioinform., 2015

2014

dbPSHP: a database of recent positive selection across human populations.

Mulin Jun Li, Lily Yan Wang, Zhengyuan Xia, Maria P. Wong, Pak Chung Sham, Junwen Wang

Nucleic Acids Res., 2014

2013

GWAS3D: detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.

Mulin Jun Li, Lily Yan Wang, Zhengyuan Xia, Pak Chung Sham, Junwen Wang

Nucleic Acids Res., 2013

2012

GWASdb: a database for human genetic variants identified by genome-wide association studies.

Mulin Jun Li, Panwen Wang, Xiaorong Liu, Ee Lyn Lim, Zhangyong Wang, Meredith Yeager, Maria P. Wong, Pak Chung Sham, Stephen J. Chanock, Junwen Wang

Nucleic Acids Res., 2012

2011

Correlated evolution of transcription factors and their binding sites.

Shu Yang, Hari Krishna Yalamanchili, Xinran Li, Kwok-Ming Yao, Pak Chung Sham, Michael Q. Zhang, Junwen Wang

Bioinform., 2011

2010

SKM-SNP: SNP markers detection method.

Yang Liu, Mark Junjie Li, Yiu-ming Cheung, Pak Chung Sham, Michael K. Ng

J. Biomed. Informatics, 2010

FastPval: a fast and memory efficient program to calculate very low <i>P</i>-values from empirical distribution.

Mulin Jun Li, Pak Chung Sham, Junwen Wang

Bioinform., 2010

2009

IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis.

Miao-Xin Li, Lin Jiang, Patrick Yu-Ping Kao, Pak Chung Sham, You-Qiang Song

Bioinform., 2009

2008

Unidimensional nonnegative scaling for genome-wide Linkage Disequilibrium maps.

Haiyong Liao, Michael K. Ng, Eric S. Fung, Pak Chung Sham

Int. J. Bioinform. Res. Appl., 2008

2007

Constrained unidimensional scaling with application to genomics.

Sio Iong Ao, Michael K. Ng, Pak Chung Sham

Comput. Stat. Data Anal., 2007

Combining functional and linkage disequilibrium information in the selection of tag SNPs.

Pak Chung Sham, Sio Iong Ao, Johnny S. H. Kwan, P. Kao, F. Cheung, Pui-Yee Fong, Michael K. Ng

Bioinform., 2007

WHAP: haplotype-based association analysis.

Shaun Purcell, Mark J. Daly, Pak Chung Sham

Bioinform., 2007

IGG: A tool to integrate GeneChips for genetic studies.

Miao-Xin Li, Lin Jiang, S.-L. Ho, You-Qiang Song, Pak Chung Sham

Bioinform., 2007

2006

Clustering of SNP Data with Application to Genomics.

Michael K. Ng, Mark Junjie Li, Sio Iong Ao, Pak Chung Sham, Yiu-ming Cheung, Joshua Zhexue Huang

Proceedings of the Workshops Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

2005

CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs.

Sio Iong Ao, Kevin Y. Yip, Michael K. Ng, David Wai-Lok Cheung, Pui-Yee Fong, Ian Melhado, Pak Chung Sham

Bioinform., 2005

2003

Generic number systems and haplotype analysis.

Jing Hua Zhao, Pak Chung Sham

Comput. Methods Programs Biomed., 2003

Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits.

Shaun Purcell, Stacey S. Cherny, Pak Chung Sham

Bioinform., 2003

2002

GENECOUNTING: haplotype analysis with missing genotypes.

Jing Hua Zhao, Sebastien Lissarrague, Laurent Essioux, Pak Chung Sham

Bioinform., 2002

Analytic approaches to twin data using structural equation models.

F. V. Rijsdijk, Pak Chung Sham

Briefings Bioinform., 2002