Pablo Meyer

According to our database, Pablo Meyer authored at least 23 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Explanation Ontology: A general-purpose, semantic representation for supporting user-centered explanations.

Shruthi Chari, Oshani Seneviratne, Mohamed F. Ghalwash, Sola Shirai, Daniel M. Gruen, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness

Semantic Web, 2024

Multi-view biomedical foundation models for molecule-target and property prediction.

Parthasarathy Suryanarayanan, Yunguang Qiu, Shreyans Sethi, Diwakar Mahajan, Hongyang Li, Yuxin Yang, Elif K. Eyigöz, Aldo Guzmán-Sáenz, Daniel E. Platt, Timothy H. Rumbell, Kenney Ng, Sanjoy Dey, Myson Burch, Bum Chul Kwon, Pablo Meyer, Feixiong Cheng, Jianying Hu, Joseph A. Morrone

CoRR, 2024

2023

Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes.

Shruthi Chari, Prasant Acharya, Daniel M. Gruen, Olivia Zhang, Elif K. Eyigöz, Mohamed F. Ghalwash, Oshani Seneviratne, Fernando J. Suarez Saiz, Pablo Meyer, Prithwish Chakraborty, Deborah L. McGuinness

Artif. Intell. Medicine, March, 2023

Improving Primary Healthcare Workflow Using Extreme Summarization of Scientific Literature Based on Generative AI.

Gregor Stiglic, Leon Kopitar, Lucija Gosak, Primoz Kocbek, Zhe He, Prithwish Chakraborty, Pablo Meyer, Jiang Bian

CoRR, 2023

2022

Human-centered explainability for life sciences, healthcare, and medical informatics.

Sanjoy Dey, Prithwish Chakraborty, Bum Chul Kwon, Amit Dhurandhar, Mohamed F. Ghalwash, Fernando J. Suarez Saiz, Kenney Ng, Daby Sow, Kush R. Varshney, Pablo Meyer

Patterns, 2022

Distillation to Enhance the Portability of Risk Models Across Institutions with Large Patient Claims Database.

Steve Nyemba, Chao Yan, Ziqi Zhang, Amol Rajmane, Pablo Meyer, Prithwish Chakraborty, Bradley A. Malin

CoRR, 2022

2021

Leveraging Clinical Context for User-Centered Explainability: A Diabetes Use Case.

Shruthi Chari, Prithwish Chakraborty, Mohamed F. Ghalwash, Oshani Seneviratne, Elif K. Eyigöz, Daniel M. Gruen, Fernando J. Suarez Saiz, Ching-Hua Chen, Pablo Meyer Rojas, Deborah L. McGuinness

CoRR, 2021

Disease Progression Modeling Workbench 360.

Parthasarathy Suryanarayanan, Prithwish Chakraborty, Piyush Madan, Kibichii Bore, William Ogallo, Rachita Chandra, Mohamed F. Ghalwash, Italo Buleje, Sekou L. Remy, Shilpa Mahatma, Pablo Meyer, Jianying Hu

CoRR, 2021

2015

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer

PLoS Comput. Biol., 2015

DREAMTools: a Python package for scoring collaborative challenges.

Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez

F1000Research, 2015

Advances in systems biology - New trends and perspectives.

Enrique Hernández-Lemus, Wentian Li, Pablo Meyer

Comput. Biol. Chem., 2015

Enzyme function is regulated by its localization.

Stacey M. Gifford, Pablo Meyer

Comput. Biol. Chem., 2015

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.

Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng

Bioinform., 2015

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets.

Sahand Hormoz, Gyan Bhanot, Michael Biehl, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Adel Dayarian

Bioinform., 2015

Where are we at regarding species translation? A review of the sbv IMPROVER challenge.

Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica

Bioinform., 2015

Inter-species pathway perturbation prediction via data-driven detection of functional homology.

Christoph Hafemeister, Roberto Romero, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Richard Bonneau, Adi L. Tarca

Bioinform., 2015

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.

Adel Dayarian, Roberto Romero, Zhiming Wang, Michael Biehl, Erhan Bilal, Sahand Hormoz, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Gyan Bhanot, Feng Luo, Adi L. Tarca

Bioinform., 2015

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin

Bioinform., 2015

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Michael Biehl, Peter J. Sadowski, Gyan Bhanot, Erhan Bilal, Adel Dayarian, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Michael D. Zeller, Sahand Hormoz

Bioinform., 2015

2014

Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria.

Pablo Meyer, Guillermo A. Cecchi, Gustavo Stolovitzky

BMC Syst. Biol., 2014

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.

Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez

BMC Syst. Biol., 2014

2013

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.

Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators

Bioinform., 2013

2012

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.

Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky

Bioinform., 2012