Öznur Tastan

According to our database, Öznur Tastan authored at least 33 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Focusing on potential named entities during active label acquisition.

Ali Osman Berk Sapci, Hasan Kemik, Reyyan Yeniterzi, Öznur Tastan

Nat. Lang. Eng., 2024

2023

MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing.

Ali Osman Berk Sapci, Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Tastan, Sündüz Keles

Bioinform., October, 2023

Discovering misannotated lncRNAs using deep learning training dynamics.

Afshan Nabi, Berke Dilekoglu, Ogun Adebali, Öznur Tastan

Bioinform., January, 2023

DeepSide: A Deep Learning Approach for Drug Side Effect Prediction.

Onur Can Uner, Halil Ibrahim Kuru, Ramazan Gokberk Cinbis, Öznur Tastan, A. Ercüment Çiçek

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests.

Gulden Olgun, Öznur Tastan

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

MatchMaker: A Deep Learning Framework for Drug Synergy Prediction.

Halil Ibrahim Kuru, Öznur Tastan, A. Ercüment Çiçek

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Uncovering complementary sets of variants for predicting quantitative phenotypes.

Serhan Yilmaz, Mohamad Fakhouri, Mehmet Koyutürk, A. Ercüment Çiçek, Öznur Tastan

Bioinform., 2022

2021

SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS.

Serhan Yilmaz, Öznur Tastan, A. Ercüment Çiçek

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

PRER: A patient representation with pairwise relative expression of proteins on biological networks.

Halil Ibrahim Kuru, Mustafa Buyukozkan, Öznur Tastan

PLoS Comput. Biol., 2021

A Tool for Detecting Complementary Single Nucleotide Polymorphism Pairs in Genome-Wide Association Studies for Epistasis Testing.

Gizem Caylak, Öznur Tastan, A. Ercüment Çiçek

J. Comput. Biol., 2021

Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection.

Gizem Caylak, Öznur Tastan, A. Ercüment Çiçek

J. Comput. Biol., 2021

Focusing on Possible Named Entities in Active Named Entity Label Acquisition.

Ali Osman Berk Sapci, Öznur Tastan, Reyyan Yeniterzi

CoRR, 2021

ML with HE: Privacy Preserving Machine Learning Inferences for Genome Studies.

Seyma Selcan Magara, Ceren Yildirim, Ferhat Yaman, Berke Dilekoglu, Furkan Reha Tutas, Erdinç Öztürk, Kamer Kaya, Öznur Tastan, Erkay Savas

CoRR, 2021

Near-Optimal Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding.

Nour Almadhoun Alserr, Gulce Kale, Onur Mutlu, Öznur Tastan, Erman Ayday

CoRR, 2021

Correction to: NoRCE: non‑coding RNA sets cis enrichment tool.

Gulden Olgun, Afshan Nabi, Öznur Tastan

BMC Bioinform., 2021

NoRCE: non-coding RNA sets cis enrichment tool.

Gulden Olgun, Afshan Nabi, Öznur Tastan

BMC Bioinform., 2021

PAMOGK: a pathway graph kernel-based multiomics approach for patient clustering.

Yasin Ilkagan Tepeli, Ali Burak Ünal, Furkan Mustafa Akdemir, Öznur Tastan

Bioinform., 2021

2020

DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases.

Iman Deznabi, Busra Arabaci, Mehmet Koyutürk, Öznur Tastan

Bioinform., 2020

Active Learning for Turkish Text Classification.

Ali Osman Berk Sapci, Öznur Tastan, Reyyan Yeniterzi

Proceedings of the 28th Signal Processing and Communications Applications Conference, 2020

Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors.

Gulden Olgun, Öznur Tastan

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2018

An Inference Attack on Genomic Data Using Kinship, Complex Correlations, and Phenotype Information.

Iman Deznabi, Mohammad Mobayen, Nazanin Jafari, Öznur Tastan, Erman Ayday

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Active Learning Methods based on Statistical Leverage Scores.

Cem Orhan, Öznur Tastan

CoRR, 2018

A utility maximizing and privacy preserving approach for protecting kinship in genomic databases.

Gulce Kale, Erman Ayday, Öznur Tastan

Bioinform., 2018

2017

GLANET: genomic loci annotation and enrichment tool.

Burçak Otlu, Can Firtina, Sündüz Keles, Öznur Tastan

Bioinform., 2017

2016

Identification of Cancer Patient Subgroups via Smoothed Shortest Path Graph Kernel.

Ali Burak Ünal, Öznur Tastan

CoRR, 2016

2015

ALEVS: Active Learning by Statistical Leverage Sampling.

Cem Orhan, Öznur Tastan

CoRR, 2015

Refining Literature Curated Protein Interactions Using Expert Opinions.

Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2011

Virus interactions with human signal transduction pathways.

Zhongming Zhao, Junfeng Xia, Öznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman

Int. J. Comput. Biol. Drug Des., 2011

2010

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.

Yanjun Qi, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston

Bioinform., 2010

Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments.

Subhodeep Moitra, Naveena Yanamala, Öznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman

Proceedings of the 5th International Conference on System of Systems Engineering, 2010

Comparison of virus interactions with human signal transduction pathways.

Irtisha Singh, Öznur Tastan, Judith Klein-Seetharaman

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration.

Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1.

Sivaraman Balakrishnan, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009