Ozgun Babur

According to our database, Ozgun Babur authored at least 16 papers between 2002 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Causal interactions from proteomic profiles: Molecular data meet pathway knowledge.

Özgün Babur, Augustin Luna, Anil Korkut, Funda Durupinar, Metin Can Siper, Ugur Dogrusoz, Alvaro Sebastian Vaca Jacome, Ryan Peckner, Karen E. Christianson, Jacob D. Jaffe, Paul T. Spellman, Joseph E. Aslan, Chris Sander, Emek Demir

Patterns, 2021

Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.

Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz

Bioinform., 2021

2020

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.

Igor V. Rodchenkov, Ozgun Babur, Augustin Luna, Bülent Arman Aksoy, Jeffrey V. Wong, Dylan Fong, Max Franz, Metin Can Siper, Manfred Cheung, Michael Wrana, Harsh Mistry, Logan Mosier, Jonah Dlin, Qizhi Wen, Caitlin O'Callaghan, Wanxin Li, Geoffrey Elder, Peter T. Smith, Christian Dallago, Ethan Cerami, Benjamin Gross, Ugur Dogrusoz, Emek Demir, Gary D. Bader, Chris Sander

Nucleic Acids Res., 2020

2018

Large-scale automated machine reading discovers new cancer-driving mechanisms.

Marco Antonio Valenzuela-Escárcega, Özgün Babur, Gus Hahn-Powell, Dane Bell, Thomas Hicks, Enrique Noriega-Atala, Xia Wang, Mihai Surdeanu, Emek Demir, Clayton T. Morrison

Database J. Biol. Databases Curation, 2018

2017

PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data.

Istemi Bahceci, Ugur Dogrusoz, Konnor C. La, Özgün Babur, Jianjiong Gao, Nikolaus Schultz

Bioinform., 2017

2016

PaxtoolsR: pathway analysis in R using Pathway Commons.

Augustin Luna, Özgün Babur, Bülent Arman Aksoy, Emek Demir, Chris Sander

Bioinform., 2016

Collaborative Workspaces for Pathway Curation.

Funda Durupinar-Babur, Metin Can Siper, Ugur Dogrusoz, Istemi Bahceci, Ozgun Babur, Emek Demir

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2014

Pattern search in BioPAX models.

Özgün Babur, Bülent Arman Aksoy, Igor V. Rodchenkov, Selçuk Onur Sümer, Chris Sander, Emek Demir

Bioinform., 2014

Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles.

Bülent Arman Aksoy, Emek Demir, Özgün Babur, Weiqing Wang, Xiaohong Jing, Nikolaus Schultz, Chris Sander

Bioinform., 2014

2013

Using Biological Pathway Data with Paxtools.

Emek Demir, Özgün Babur, Igor V. Rodchenkov, Bülent Arman Aksoy, Ken I. Fukuda, Benjamin E. Gross, Selçuk Onur Sümer, Gary D. Bader, Chris Sander

PLoS Comput. Biol., 2013

2011

Pathway Commons, a web resource for biological pathway data.

Ethan G. Cerami, Benjamin E. Gross, Emek Demir, Igor V. Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz, Gary D. Bader, Chris Sander

Nucleic Acids Res., 2011

2010

ChiBE: interactive visualization and manipulation of BioPAX pathway models.

Ozgun Babur, Ugur Dogrusöz, Emek Demir, Chris Sander

Bioinform., 2010

2009

Algorithms for effective querying of compound graph-based pathway databases.

Ugur Dogrusöz, Ahmet Cetintas, Emek Demir, Ozgun Babur

BMC Bioinform., 2009

2006

Patika<i>web</i>: a Web interface for analyzing biological pathways through advanced querying and visualization.

Ugur Dogrusöz, E. Z. Erson, Erhan Giral, Emek Demir, Ozgun Babur, Ahmet Cetintas, R. Colak

Bioinform., 2006

2004

An ontology for collaborative construction and analysis of cellular pathways.

Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, A. Ayaz, Gürcan Gülesir, Gurkan Nisanci, Rengül Çetin-Atalay

Bioinform., 2004

2002

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.

Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, Gurkan Nisanci, Rengül Çetin-Atalay, Mehmet Ozturk

Bioinform., 2002