Owen White

According to our database, Owen White authored at least 20 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.

Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White

Nucleic Acids Res., January, 2023

2022

Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem.

Michelle G. Giglio, Suvarna Nadendla, Arthur Brady, Amanda Charbonneau, Karl Czajkowski, Jeremy Yang, Tom Gillespie, Philippe Rocca-Serra, Jeffrey S. Grethe, Raja Mazumder, Bernard de Bono, Jonathan C. Silverstein, Daniel Clark, Mark A. Musen, Owen White

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

HMPDACC: a Human Microbiome Project Multi-omic data resource.

Heather Huot Creasy, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White

Nucleic Acids Res., 2021

2014

MetaRef: a pan-genomic database for comparative and community microbial genomics.

Katherine Huang, Arthur Brady, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower, Nicola Segata

Nucleic Acids Res., 2014

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.

Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. A. Myers, David A. Rasko, Owen White

Bioinform., 2014

Standardized description of scientific evidence using the Evidence Ontology (ECO).

Marcus C. Chibucos, Christopher J. Mungall, Rama Balakrishnan, Karen R. Christie, Rachael P. Huntley, Owen White, Judith A. Blake, Suzanna E. Lewis, Michelle G. Giglio

Database J. Biol. Databases Curation, 2014

2012

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.

Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower

PLoS Comput. Biol., 2012

2011

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing.

Samuel V. Angiuoli, Malcolm Matalka, Aaron Gussman, Kevin Galens, Mahesh Vangala, David R. Riley, Cesar Arze, James Robert White, Owen White, W. Florian Fricke

BMC Bioinform., 2011

Towards BioDBcore: a community-defined information specification for biological databases.

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki

Database J. Biol. Databases Curation, 2011

2010

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.

Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Anurhada Ganapathy, Victor Felix, Anup Mahurkar, Katherine H. Phillippy, Aaron Gussman, Samuel V. Angiuoli, Elodie Ghedin, Owen White, Neil Hall

Nucleic Acids Res., 2010

The comprehensive microbial resource.

Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Robert Montgomery, Nikhat Zafar, Qi Yang, Ramana Madupu, Phil Goetz, Kevin Galinsky, Owen White, Granger G. Sutton

Nucleic Acids Res., 2010

Pathema: a clade-specific bioinformatics resource center for pathogen research.

Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth A. Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton

Nucleic Acids Res., 2010

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli

Bioinform., 2010

2007

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Jeremy D. Selengut, Daniel H. Haft, Tanja Davidsen, Anurhada Ganapathy, Michelle Gwinn-Giglio, William C. Nelson, Alexander R. Richter, Owen White

Nucleic Acids Res., 2007

Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents.

Lynn M. Schriml, Aaron Gussman, Kathy Phillippy, Samuel V. Angiuoli, Kumar Hari, Alan Goates, Ravi Jain, Tanja Davidsen, Anurhada Ganapathy, Elodie Ghedin, Steven Salzberg, Owen White, Neil Hall

Proceedings of the Intelligence and Security Informatics: Biosurveillance, 2007

2005

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Daniel H. Haft, Jeremy D. Selengut, Lauren M. Brinkac, Nikhat Zafar, Owen White

Bioinform., 2005

2003

The TIGRFAMs database of protein families.

Daniel H. Haft, Jeremy D. Selengut, Owen White

Nucleic Acids Res., 2003

Bacterial Annotation Tools.

Owen White

Proceedings of the German Conference on Bioinformatics, 2003

2001

The Comprehensive Microbial Resource.

Jeremy D. Peterson, Lowell A. Umayam, Tanja Dickinson, Erin K. Hickey, Owen White

Nucleic Acids Res., 2001

TIGRFAMs: a protein family resource for the functional identification of proteins.

Daniel H. Haft, Brendan J. Loftus, Delwood L. Richardson, Fan Yang, Jonathan A. Eisen, Ian T. Paulsen, Owen White

Nucleic Acids Res., 2001