Otto Valladares

According to our database, Otto Valladares authored at least 10 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

hipFG: high-throughput harmonization and integration pipeline for functional genomics data.

Jeffrey Cifello, Pavel P. Kuksa, Naveensri Saravanan, Otto Valladares, Li-San Wang, Yuk Yee Leung

Bioinform., November, 2023

2020

SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.

Pavel P. Kuksa, Chien-Yueh Lee, Alexandre Amlie-Wolf, Prabhakaran Gangadharan, Elizabeth E. Mlynarski, Yi-Fan Chou, Han-Jen Lin, Heather Issen, Emily Greenfest-Allen, Otto Valladares, Yuk Yee Leung, Li-San Wang

Bioinform., 2020

2019

VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.

Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, William J. Salerno, Gerard D. Schellenberg, Li-San Wang

Bioinform., 2019

VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.

Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, Prabhakaran Gangadharan, William J. Salerno, Gerard D. Schellenberg, Li-San Wang

Bioinform., 2019

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.

Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung

Bioinform., 2019

2018

SPAR: small RNA-seq portal for analysis of sequencing experiments.

Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung

Nucleic Acids Res., 2018

2016

DASHR: database of small human noncoding RNAs.

Yuk Yee Leung, Pavel P. Kuksa, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, Li-San Wang

Nucleic Acids Res., 2016

2015

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.

Yih-Chii Hwang, Chiao-Feng Lin, Otto Valladares, John Malamon, Pavel P. Kuksa, Qi Zheng, Brian D. Gregory, Li-San Wang

Bioinform., 2015

2013

DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments.

Chiao-Feng Lin, Otto Valladares, Daniel M. Childress, Egor Klevak, Evan T. Geller, Yih-Chii Hwang, Ellen A. Tsai, Gerard D. Schellenberg, Li-San Wang

Bioinform., 2013

2012

SAVoR: a server for sequencing annotation and visualization of RNA structures.

Fan Li, Paul Ryvkin, Daniel M. Childress, Otto Valladares, Brian D. Gregory, Li-San Wang

Nucleic Acids Res., 2012