Ondrej Strnad

According to our database, Ondrej Strnad authored at least 20 papers between 2012 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Errata to "DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to a Cryo-EM Map".

Deng Luo, Zainab Alsuwaykit, Dawar Khan, Ondrej Strnad, Tobias Isenberg, Ivan Viola

IEEE Trans. Vis. Comput. Graph., February, 2025

DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to a Cryo-EM Map.

Deng Luo, Zainab Alsuwaykit, Dawar Khan, Ondrej Strnad, Tobias Isenberg, Ivan Viola

IEEE Trans. Vis. Comput. Graph., January, 2025

2024

GPU Accelerated 3D Tomographic Reconstruction and Visualization From Noisy Electron Microscopy Tilt-Series.

Julio Rey Ramirez, Peter Rautek, Ciril Bohak, Ondrej Strnad, Zheyuan Zhang, Sai Li, Ivan Viola, Wolfgang Heidrich

IEEE Trans. Vis. Comput. Graph., July, 2024

Volume conductor: interactive visibility management for crowded volumes.

Ziga Lesar, Ruwayda Alharbi, Ciril Bohak, Ondrej Strnad, Christoph Heinzl, Matija Marolt, Ivan Viola

Vis. Comput., February, 2024

Nanouniverse: Virtual Instancing of Structural Detail and Adaptive Shell Mapping.

Ruwayda Alharbi, Ondrej Strnad, Markus Hadwiger, Ivan Viola

CoRR, 2024

Towards Differentiable Electron Microscopy Simulation: Methods and Applications.

Ngan V. T. Nguyen, Feng Liang, Dominik Engel, Ciril Bohak, Ondrej Strnad, Timo Ropinski, Ivan Viola

Proceedings of the 17th IEEE Pacific Visualization Conference, 2024

2023

Finding Nano-Ötzi: Cryo-Electron Tomography Visualization Guided by Learned Segmentation.

Ngan V. T. Nguyen, Ciril Bohak, Dominik Engel, Peter Mindek, Ondrej Strnad, Peter Wonka, Sai Li, Timo Ropinski, Ivan Viola

IEEE Trans. Vis. Comput. Graph., October, 2023

Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization.

David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., March, 2023

Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments.

Ruwayda Alharbi, Ondrej Strnad, Laura Rosalia Luidolt, Manuela Waldner, David Kouril, Ciril Bohak, Tobias Klein, Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., March, 2023

VOICE: Visual Oracle for Interaction, Conversation, and Explanation.

Donggang Jia, Alexandra Irger, Ondrej Strnad, Johanna Björklund, Anders Ynnerman, Ivan Viola

CoRR, 2023

2022

SynopSet: Multiscale Visual Abstraction Set for Explanatory Analysis of DNA Nanotechnology Simulations.

Deng Luo, Alexandre Kouyoumdjian, Ondrej Strnad, Haichao Miao, Ivan Barisic, Ivan Viola

CoRR, 2022

Nanomatrix: Scalable Construction of Crowded Biological Environments.

Ruwayda Alharbi, Ondrej Strnad, Tobias Klein, Ivan Viola

CoRR, 2022

2021

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models.

Ngan V. T. Nguyen, Ondrej Strnad, Tobias Klein, Deng Luo, Ruwayda Alharbi, Peter Wonka, Martina Maritan, Peter Mindek, Ludovic Autin, David S. Goodsell, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2021

@What does a virus actually look like?

Peter Mindek, Ivan Viola, Ondrej Strnad, Ciril Bohak, Sai Li, Tobias Klein

Proceedings of the SIGGRAPH 2021: Special Interest Group on Computer Graphics and Interactive Techniques Conference, 2021

2020

Molecumentary: Scalable Narrated Documentaries Using Molecular Visualization.

David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola

CoRR, 2020

2018

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.

Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková

Bioinform., 2018

2014

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.

Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor

Bioinform., 2014

Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations.

Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor

Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine, 2014

Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures.

Ondrej Strnad, Barbora Kozlíková, Jiri Sochor

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2012

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures.

Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský

PLoS Comput. Biol., 2012