Olli T. Pentikäinen

Orcid: 0000-0001-7188-4016

According to our database1, Olli T. Pentikäinen authored at least 13 papers between 2004 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of five.

Timeline

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Bibliography

2024
Building shape-focused pharmacophore models for effective docking screening.
J. Cheminformatics, December, 2024

Atomistic simulations reveal impacts of missense mutations on the structure and function of SynGAP1.
Briefings Bioinform., 2024

2022
Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool.
J. Chem. Inf. Model., 2022

Optimization of Cavity-Based Negative Images to Boost Docking Enrichment in Virtual Screening.
J. Chem. Inf. Model., 2022

2021
Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

2019
Getting Docking into Shape Using Negative Image-Based Rescoring.
J. Chem. Inf. Model., 2019

2016
Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization.
J. Cheminformatics, 2016

2015
Ultrafast protein structure-based virtual screening with Panther.
J. Comput. Aided Mol. Des., 2015

2013
MMGBSA As a Tool To Understand the Binding Affinities of Filamin-Peptide Interactions.
J. Chem. Inf. Model., 2013

2011
Full and Partial Agonism of Ionotropic Glutamate Receptors Indicated by Molecular Dynamics Simulations.
J. Chem. Inf. Model., 2011

Comparison of Virtual High-Throughput Screening Methods for the Identification of Phosphodiesterase-5 Inhibitors.
J. Chem. Inf. Model., 2011

2010
Efficient Virtual Screening Using Multiple Protein Conformations Described as Negative Images of the Ligand-Binding Site.
J. Chem. Inf. Model., 2010

2004
BODIL: a molecular modeling environment for structure-function analysis and drug design.
J. Comput. Aided Mol. Des., 2004


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