Olli-P. Kallioniemi

According to our database, Olli-P. Kallioniemi authored at least 19 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2023

Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.

Potdar Swapnil, Filipp Ianevski, Aleksandr Ianevski, ZiaurRehman Tanoli, Krister Wennerberg, Brinton Seashore-Ludlow, Olli-P. Kallioniemi, Päivi Östling, Tero Aittokallio, Saarela Jani

Nucleic Acids Res., July, 2023

2020

Breeze: an integrated quality control and data analysis application for high-throughput drug screening.

Potdar Swapnil, Aleksandr Ianevski, John-Patrick Mpindi, Dmitrii Bychkov, Clément Fiere, Philipp Ianevski, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio, Olli-P. Kallioniemi, Saarela Jani, Päivi Östling

Bioinform., 2020

2016

Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization.

Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani, Astrid Murumägi, Olli-P. Kallioniemi, Tero Aittokallio, Samuel Kaski

Bioinform., 2016

2015

Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data.

John-Patrick Mpindi, Potdar Swapnil, Dmitrii Bychkov, Saarela Jani, Khalid Saeed, Krister Wennerberg, Tero Aittokallio, Päivi Östling, Olli-P. Kallioniemi

Bioinform., 2015

2014

Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization.

Muhammad Ammad-ud-din, Elisabeth Georgii, Mehmet Gönen, Tuomo Laitinen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski

J. Chem. Inf. Model., 2014

Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis.

Suleiman A. Khan, Seppo Virtanen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski

Bioinform., 2014

2012

Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs.

Suleiman A. Khan, Ali Faisal, John Mpindi, Juuso A. Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli-P. Kallioniemi, Krister Wennerberg, Samuel Kaski

BMC Bioinform., 2012

Delivering ICT infrastructure for biomedical research.

Tommi H. Nyrönen, Jarno Laitinen, Olli Tourunen, Danny Sternkopf, Risto Laurikainen, Per Öster, Pekka T. Lehtovuori, Timo A. Miettinen, Tomi Simonen, Teemu Perheentupa, Imre Vastrik, Olli-P. Kallioniemi, Andrew Lyall, Janet M. Thornton

Proceedings of the 2012 Joint Working IEEE/IFIP Conference on Software Architecture and European Conference on Software Architecture, 2012

2011

On the organization of bioinformatics core services in biology-based research institutes.

Olli-P. Kallioniemi, Lodewyk F. A. Wessels, Alfonso Valencia

Bioinform., 2011

Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data.

Sami Kilpinen, Kalle A. Ojala, Olli-P. Kallioniemi

BioData Min., 2011

2009

Critical Comparison of Virtual Screening Methods against the MUV Data Set.

Pekka Tiikkainen, Patrick Markt, Gerhard Wolber, Johannes Kirchmair, Simona Distinto, Antti Poso, Olli-P. Kallioniemi

J. Chem. Inf. Model., 2009

Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens.

Pekka Tiikkainen, Antti Poso, Olli-P. Kallioniemi

J. Comput. Aided Mol. Des., 2009

Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations.

Reija Autio, Sami Kilpinen, Matti Saarela, Olli-P. Kallioniemi, Sampsa Hautaniemi, Jaakko Astola

BMC Bioinform., 2009

2004

A strategy for identifying putative causes of gene expression variation in human cancers.

Sampsa Hautaniemi, Markus Ringnér, Päivikki Kauraniemi, Reija Autio, Henrik Edgren, Olli Yli-Harja, Jaakko Astola, Anne Kallioniemi, Olli-Pekka Kallioniemi

J. Frankl. Inst., 2004

2003

Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps.

Sampsa Hautaniemi, Olli Yli-Harja, Jaakko Astola, Päivikki Kauraniemi, Anne Kallioniemi, Maija Wolf, Jimmy Ruiz, Spyro Mousses, Olli-P. Kallioniemi

Mach. Learn., 2003

A novel strategy for microarray quality control using Bayesian networks.

Sampsa Hautaniemi, Henrik Edgren, Petri Vesanen, Maija Wolf, Anna-Kaarina Järvinen, Olli Yli-Harja, Jaakko Astola, Olli-P. Kallioniemi, Outi Monni

Bioinform., 2003

2002

Simulation Toolbox for 3D-FISH Spot-Counting Algorithms.

Artyom M. Grigoryan, Galen Hostetter, Olli-P. Kallioniemi, Edward R. Dougherty

Real Time Imaging, 2002

2000

Distance-Based Reconstruction of Tree Models for Oncogenesis.

Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer

J. Comput. Biol., 2000

1999

Inferring Tree Models for Oncogenesis from Comparative Genome Hybridization Data.

Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer

J. Comput. Biol., 1999