Olivier Michielin

Orcid: 0000-0003-4926-6355

According to our database1, Olivier Michielin authored at least 27 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2024
HoverFast: an accurate, high-throughput, clinically deployable nuclear segmentation tool for brightfield digital pathology images.
J. Open Source Softw., 2024

2023
SwissParam 2023: A Modern Web-Based Tool for Efficient Small Molecule Parametrization.
J. Chem. Inf. Model., November, 2023

Multilingual RECIST classification of radiology reports using supervised learning.
Frontiers Digit. Health, May, 2023

2022
SwissBioisostere 2021: updated structural, bioactivity and physicochemical data delivered by a reshaped web interface.
Nucleic Acids Res., 2022


2020
SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

A Process Mining Approach to Statistical Analysis: Application to a Real-World Advanced Melanoma Dataset.
Proceedings of the Process Mining Workshops, 2020

2019
MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules.
Nucleic Acids Res., 2019

2016
SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual Screening.
J. Chem. Inf. Model., 2016

Attracting cavities for docking. Replacing the rough energy landscape of the protein by a smooth attracting landscape.
J. Comput. Chem., 2016

2014
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res., 2014

SwissTargetPrediction: a web server for target prediction of bioactive small molecules.
Nucleic Acids Res., 2014

iLOGP: A Simple, Robust, and Efficient Description of <i>n</i>-Octanol/Water Partition Coefficient for Drug Design Using the GB/SA Approach.
J. Chem. Inf. Model., 2014

2013
SwissBioisostere: a database of molecular replacements for ligand design.
Nucleic Acids Res., 2013

SwissSidechain: a molecular and structural database of non-natural sidechains.
Nucleic Acids Res., 2013

Protein pocket and ligand shape comparison and its application in virtual screening.
J. Comput. Aided Mol. Des., 2013

Shaping the interaction landscape of bioactive molecules.
Bioinform., 2013

2012
Expanding molecular modeling and design tools to non-natural sidechains.
J. Comput. Chem., 2012

Defining and searching for structural motifs using DeepView/Swiss-PdbViewer.
BMC Bioinform., 2012

2011
SwissDock, a protein-small molecule docking web service based on EADock DSS.
Nucleic Acids Res., 2011

SwissParam: A fast force field generation tool for small organic molecules.
J. Comput. Chem., 2011

Fast docking using the CHARMM force field with EADock DSS.
J. Comput. Chem., 2011

2010
Fourier transform convolution integrals applied to generalized Born molecular volume.
J. Comput. Chem., 2010

2009
Docking to heme proteins.
J. Comput. Chem., 2009

Blind docking of 260 protein-ligand complexes with EADock 2.0.
J. Comput. Chem., 2009

2003
Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors.
J. Comput. Aided Mol. Des., 2003


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