Olivier Gandrillon

According to our database, Olivier Gandrillon authored at least 30 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Modeling relaxation experiments with a mechanistic model of gene expression.

Maxime Estavoyer, Marion Dufeu, Grégoire Ranson, Sylvain Lefort, Thibault Voeltzel, Véronique Maguer-Satta, Olivier Gandrillon, Thomas Lepoutre

BMC Bioinform., December, 2024

TopoDoE: a design of experiment strategy for selection and refinement in ensembles of executable gene regulatory networks.

Matteo Bouvier, Souad Zreika, Elodie Vallin, Camille Fourneaux, Sandrine Gonin-Giraud, Arnaud Bonnaffoux, Olivier Gandrillon

BMC Bioinform., December, 2024

2023

One model fits all: Combining inference and simulation of gene regulatory networks.

Elias Ventre, Ulysse Herbach, Thibault Espinasse, Gérard Benoit, Olivier Gandrillon

PLoS Comput. Biol., March, 2023

scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data.

Maxime Lepetit, Mirela Diana Ilie, Marie Chanal, Gerald Raverot, Philippe Bertolino, Christophe Arpin, Franck Picard, Olivier Gandrillon

Silico Biol., 2023

Kernel-Based Testing for Single-Cell Differential Analysis.

Anthony Ozier-Lafontaine, Camille Fourneaux, Ghislain Durif, Céline Vallot, Olivier Gandrillon, Sandrine Giraud, Bertrand Michel, Franck Picard

CoRR, 2023

2021

Modeling and characterization of inter-individual variability in CD8 T cell responses in mice.

Chloe Audebert, Daphné Laubreton, Christophe Arpin, Olivier Gandrillon, Jacqueline Marvel, Fabien Crauste

Silico Biol., 2021

Practical identifiability in the frame of nonlinear mixed effects models: the example of the in vitro erythropoiesis.

Ronan Duchesne, Anissa Guillemin, Olivier Gandrillon, Fabien Crauste

BMC Bioinform., 2021

2019

Calibration, Selection and Identifiability Analysis of a Mathematical Model of the <i>in vitro</i> Erythropoiesis in Normal and Perturbed Contexts.

Ronan Duchesne, Anissa Guillemin, Fabien Crauste, Olivier Gandrillon

Silico Biol., 2019

WASABI: a dynamic iterative framework for gene regulatory network inference.

Arnaud Bonnaffoux, Ulysse Herbach, Angélique Richard, Anissa Guillemin, Sandrine Gonin-Giraud, Pierre-Alexis Gros, Olivier Gandrillon

BMC Bioinform., 2019

2018

SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles.

Nan Papili Gao, S. M. Minhaz Ud-Dean, Olivier Gandrillon, Rudiyanto Gunawan

Bioinform., 2018

A Cloud-aware Autonomous Workflow Engine and Its Application to Gene Regulatory Networks Inference.

Arnaud Bonnaffoux, Eddy Caron, Hadrien Croubois, Olivier Gandrillon

Proceedings of the 8th International Conference on Cloud Computing and Services Science, 2018

2016

IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8⁺ T cell-APC: a multiscale modeling study.

Xuefeng Gao, Christophe Arpin, Jacqueline Marvel, Sotiris A. Prokopiou, Olivier Gandrillon, Fabien Crauste

BMC Syst. Biol., 2016

2015

Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts.

Peggy Cellier, Thierry Charnois, Marc Plantevit, Christophe Rigotti, Bruno Crémilleux, Olivier Gandrillon, Jirí Kléma, Jean-Luc Manguin

J. Biomed. Semant., 2015

2014

Finding maximal homogeneous clique sets.

Pierre-Nicolas Mougel, Christophe Rigotti, Marc Plantevit, Olivier Gandrillon

Knowl. Inf. Syst., 2014

Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study.

Sotiris A. Prokopiou, Loïc Barbarroux, Samuel Bernard, Julien Mafille, Yann Leverrier, Christophe Arpin, Jacqueline Marvel, Olivier Gandrillon, Fabien Crauste

Comput., 2014

2012

Finding Collections of k-Clique Percolated Components in Attributed Graphs.

Pierre-Nicolas Mougel, Christophe Rigotti, Olivier Gandrillon

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2012

2011

Extraction sous contraintes d'ensembles de cliques homogènes.

Pierre-Nicolas Mougel, Marc Plantevit, Christophe Rigotti, Olivier Gandrillon, Jean-François Boulicaut

Proceedings of the Extraction et gestion des connaissances (EGC'2011), 2011

2010

On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.

Antoine Coulon, Olivier Gandrillon, Guillaume Beslon

BMC Syst. Biol., 2010

Using a Solver Over the String Pattern Domain to Analyze Gene Promoter Sequences.

Christophe Rigotti, Ieva Mitasiunaite, Jérémy Besson, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon

Proceedings of the Inductive Databases and Constraint-Based Data Mining., 2010

2009

Extracting Signature Motifs from Promoter Sets of Differentially Expressed Genes.

Ieva Mitasiunaite, Christophe Rigotti, Stéphane Schicklin, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon

Silico Biol., 2009

Learning Constrained Edit State Machines.

Laurent Boyer, Olivier Gandrillon, Amaury Habrard, Mathilde Pellerin, Marc Sebban

Proceedings of the ICTAI 2009, 2009

2008

Constraint-Based Knowledge Discovery from SAGE Data.

Jirí Kléma, Sylvain Blachon, Arnaud Soulet, Bruno Crémilleux, Olivier Gandrillon

Silico Biol., 2008

SQUAT: A web tool to mine human, murine and avian SAGE data.

Johan Leyritz, Stéphane Schicklin, Sylvain Blachon, Céline Keime, Céline Robardet, Jean-François Boulicaut, Jérémy Besson, Ruggero G. Pensa, Olivier Gandrillon

BMC Bioinform., 2008

2007

Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées.

Antoine Coulon, Hédi Soula, Olivier Mazet, Olivier Gandrillon, Guillaume Beslon

Tech. Sci. Informatiques, 2007

Clustering Formal Concepts to Discover Biologically Relevant Knowledge from Gene Expression Data.

Sylvain Blachon, Ruggero G. Pensa, Jérémy Besson, Céline Robardet, Jean-François Boulicaut, Olivier Gandrillon

Silico Biol., 2007

Unexpected observations after mapping LongSAGE tags to the human genome.

Céline Keime, Marie Sémon, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon

BMC Bioinform., 2007

2006

Mining Plausible Patterns from Genomic Data.

Jirí Kléma, Arnaud Soulet, Bruno Crémilleux, Sylvain Blachon, Olivier Gandrillon

Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005

Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software.

Hédi Soula, Céline Robardet, François Perrin, Sébastien Gripon, Guillaume Beslon, Olivier Gandrillon

BMC Bioinform., 2005

2004

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Céline Keime, Francesca Damiola, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon

BMC Bioinform., 2004

2003

Mining Concepts from Large SAGE Gene Expression Matrices.

François Rioult, Céline Robardet, Sylvain Blachon, Bruno Crémilleux, Olivier Gandrillon, Jean-François Boulicaut

Proceedings of the Second International Workshop on Inductive Databases, 2003