Olivier Dameron

According to our database, Olivier Dameron authored at least 42 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints.

Marine Louarn, Guillaume Collet, Ève Barré, Thierry Fest, Olivier Dameron, Anne Siegel, Fabrice Chatonnet

PLoS Comput. Biol., January, 2024

Phenotypes Extraction from Text: Analysis and Perspective in the LLM Era.

Moussa Baddour, Stéphane Paquelet, Paul Rollier, Marie de Tayrac, Olivier Dameron, Thomas Labbé

Proceedings of the 12th IEEE International Conference on Intelligent Systems, 2024

2023

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies.

Camille Juigné, Olivier Dameron, François Moreews, Florence Gondret, Emmanuelle Becker

Bioinform., May, 2023

2022

Improving reusability along the data life cycle: a regulatory circuits case study.

Marine Louarn, Fabrice Chatonnet, Xavier Garnier, Thierry Fest, Anne Siegel, Catherine Faron, Olivier Dameron

J. Biomed. Semant., 2022

Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases.

Marc Melkonian, Camille Juigné, Olivier Dameron, Gwenaël Rabut, Emmanuelle Becker

Bioinform., 2022

2021

An Extension of Chronicles Temporal Model with Taxonomies: Application to Epidemiological Studies.

Johanne Bakalara, Thomas Guyet, Olivier Dameron, André Happe, Emmanuel Oger

Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, 2021

2019

queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data.

Yann Rivault, Olivier Dameron, Nolwenn Le Meur

Bioinform., 2019

Increasing Life Science Resources Re-Usability using Semantic Web Technologies.

Marine Louarn, Fabrice Chatonnet, Xavier Garnier, Thierry Fest, Anne Siegel, Olivier Dameron

Proceedings of the 15th International Conference on eScience, 2019

2018

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.

Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier, Jeanne Got, María Paz Cortés, Sebastián N. Mendoza, Grégory Carrier, Olivier Dameron, Nicolas Guillaudeux, Mauricio Latorre, Nicolás Loira, Gabriel V. Markov, Alejandro Maass, Anne Siegel

PLoS Comput. Biol., 2018

Converting Alzheimer's Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data.

Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot

Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018

2017

Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-β Signaling.

Jean Coquet, Nathalie Théret, Vincent Legagneux, Olivier Dameron

Proceedings of the Computational Methods in Systems Biology, 2017

A Similarity Measure Based on Care Trajectories as Sequences of Sets.

Yann Rivault, Nolwenn Le Meur, Olivier Dameron

Proceedings of the Artificial Intelligence in Medicine, 2017

2016

Ontology-based methods for analyzing life science data.

Olivier Dameron

, 2016

2015

Ontology for assessment studies of human-computer-interaction in surgery.

Andrej Machno, Pierre Jannin, Olivier Dameron, Werner Korb, Gerik Scheuermann, Jürgen Meixensberger

Artif. Intell. Medicine, 2015

2014

Temporal representation of care trajectories of cancer patients using data from a regional information system: an application in breast cancer.

Gautier Defossez, Alexandre Rollet, Olivier Dameron, Pierre Ingrand

BMC Medical Informatics Decis. Mak., 2014

2013

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm.

Jean-François Ethier, Olivier Dameron, Vasa Curcin, Mark M. McGilchrist, Robert A. Verheij, Theodoros N. Arvanitis, Adel Taweel, Brendan Delaney, Anita Burgun

J. Am. Medical Informatics Assoc., 2013

OWL model of clinical trial eligibility criteria compatible with partially-known information.

Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun, Marc Cuggia

J. Biomed. Semant., 2013

2012

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms.

Charles Bettembourg, Christian Diot, Anita Burgun, Olivier Dameron

J. Biomed. Semant., 2012

ATOL: The Multi-species Livestock Trait Ontology.

Wiktoria Golik, Olivier Dameron, Jérôme Bugeon, Alice Fatet, Isabelle Hue, Catherine Hurtaud, Matthieu Reichstadt, Marie-Christine Salaün, Jean Vernet, Léa Joret, Frédéric Papazian, Claire Nedellec, Pierre-Yves Le Bail

Proceedings of the Metadata and Semantics Research - 6th Research Conference, 2012

Comparing Drools and ontology reasoning approaches for telecardiology decision support.

Pascal Van Hille, Julie Jacques, Julien Taillard, Arnaud Rosier, David Delerue, Anita Burgun, Olivier Dameron

Proceedings of the Quality of Life through Quality of Information, 2012

2010

Achieving High Research Reporting Quality Through the Use of Computational Ontologies.

Amrapali Zaveri, Luciana Cofiel, Jatin Shah, Shreyasee S. Pradhan, Edwin Chan, Olivier Dameron, Ricardo Pietrobon, Beng Ti Ang

Neuroinformatics, 2010

Mapping BFO and DOLCE.

Lynda Temal, Arnaud Rosier, Olivier Dameron, Anita Burgun

Proceedings of the MEDINFO 2010, 2010

Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study.

Nicolas Lebreton, Christophe Blanchet, Daniela Barreiro Claro, Julie Chabalier, Anita Burgun, Olivier Dameron

Proceedings of the iiWAS'2010, 2010

2009

Testing Tactics to Localize De-Identification.

Cyril Grouin, Arnaud Rosier, Olivier Dameron, Pierre Zweigenbaum

Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

2008

Gene Regulation Ontology (GRO): Design Principles and Use Cases.

Elena Beisswanger, Vivian Lee, Jung-Jae Kim, Dietrich Rebholz-Schuhmann, Andrea Splendiani, Olivier Dameron, Stefan Schulz, Udo Hahn

Proceedings of the eHealth Beyond the Horizon, 2008

Bio-ontologies Tutorial.

Olivier Dameron, Julie Chabalier

Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008

2007

Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy.

Olivier Dameron, Mark A. Musen, Bernard Gibaud

Artif. Intell. Medicine, 2007

Grading glioma tumors using OWL-DL and NCI Thesaurus.

Gwenaëlle Marquet, Olivier Dameron, Stephan Saikali, Jean Mosser, Anita Burgun

Proceedings of the AMIA 2007, 2007

2006

Using ontologies linked with geometric models to reason about penetrating injuries.

Daniel L. Rubin, Olivier Dameron, Yasser Bashir, David Grossman, Parvati Dev, Mark A. Musen

Artif. Intell. Medicine, 2006

2005

Use Case: Ontology with Rules for identifying brain anatomical structures.

Christine Golbreich, Olivier Bierlaire, Olivier Dameron, Bernard Gibaud

Proceedings of the W3C Workshop on Rule Languages for Interoperability, 2005

Protégé-OWL: Creating Ontology-Driven Reasoning Applications with the Web Ontology Language.

Daniel L. Rubin, Holger Knublauch, Ray W. Fergerson, Olivier Dameron, Mark A. Musen

Proceedings of the AMIA 2005, 2005

Use of Description Logic Classification to Reason about Consequences of Penetrating Injuries.

Daniel L. Rubin, Olivier Dameron, Mark A. Musen

Proceedings of the AMIA 2005, 2005

Challenges in Converting Frame-Based Ontology into OWL: the Foundational Model of Anatomy Case-Study.

Olivier Dameron, Daniel L. Rubin, Mark A. Musen

Proceedings of the AMIA 2005, 2005

2004

Accessing and Manipulating Ontologies Using Web Services.

Olivier Dameron, Natalya Fridman Noy, Holger Knublauch, Mark A. Musen

Proceedings of the ISWC 2004 Workshop on Semantic Web Services: Preparing to Meet the World of Business Applications, 2004

Weaving the biomedical Semantic Web with the Prote'ge' OWL Plugin.

Holger Knublauch, Olivier Dameron, Mark A. Musen

Proceedings of the KR-MED 2004, 2004

2003

Web Ontology Language Requirements w.r.t Expressiveness of Taxonomy and Axioms in Medicine.

Christine Golbreich, Olivier Dameron, Bernard Gibaud, Anita Burgun

Proceedings of the Semantic Web, 2003

Re-use of a multi-purpose knowledge corpus on cortex anatomy for educational purposes.

Bernard Gibaud, Olivier Dameron, Xavier Morandi

Proceedings of the New Navigators: from Professionals to Patients, 2003

Modelling dependencies between relations to ensure consistency of a cerebral cortex anatomy knowledge base.

Olivier Dameron, Anita Burgun, Xavier Morandi, Bernard Gibaud

Proceedings of the New Navigators: from Professionals to Patients, 2003

How to Represent Medical Ontologies in View of a Semantic Web?

Christine Golbreich, Olivier Dameron, Bernard Gibaud, Anita Burgun

Proceedings of the Artificial Intelligence in Medicine, 2003

2002

Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons learned from a prototype.

Olivier Dameron, Bernard Gibaud, Anita Burgun, Xavier Morandi

Proceedings of the AMIA 2002, 2002

2001

Representing and sharing numeric and symbolic knowledge of brain cortex anatomy using web technology.

Bernard Gibaud, Olivier Dameron, Xavier Morandi

Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

Numeric and Symbolic Knowledge Representation of Cortex Anatomy Using Web Technologies.

Olivier Dameron, Bernard Gibaud, Xavier Morandi

Proceedings of the Artificial Intelligence Medicine, 2001