Oliver Rübel

According to our database, Oliver Rübel authored at least 36 papers between 2006 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Distributed Augmentation, Hypersweeps, and Branch Decomposition of Contour Trees for Scientific Exploration.

Mingzhe Li, Hamish A. Carr, Oliver Rübel, Bei Wang, Gunther H. Weber

IEEE Trans. Vis. Comput. Graph., January, 2025

2024

Methods for Linking Data to Online Resources and Ontologies with Applications to Neurophysiology.

Matthew Avaylon, Ryan Ly, Andrew J. Tritt, Benjamin K. Dichter, Kristofer E. Bouchard, Christopher J. Mungall, Oliver Rübel

CoRR, 2024

2022

Optimization and Augmentation for Data Parallel Contour Trees.

Hamish A. Carr, Oliver Rübel, Gunther H. Weber, James P. Ahrens

IEEE Trans. Vis. Comput. Graph., 2022

FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective.

Eliu A. Huerta, Ben Blaiszik, L. Catherine Brinson, Kristofer E. Bouchard, Daniel Diaz, Caterina Doglioni, Javier M. Duarte, Murali Emani, Ian T. Foster, Geoffrey C. Fox, Philip C. Harris, Lukas Heinrich, Shantenu Jha, Daniel S. Katz, Volodymyr V. Kindratenko, Christine R. Kirkpatrick, Kati Lassila-Perini, Ravi K. Madduri, Mark S. Neubauer, Fotis E. Psomopoulos, Avik Roy, Oliver Rübel, Zhizhen Zhao, Ruike Zhu

CoRR, 2022

Distributed Hierarchical Contour Trees.

Hamish A. Carr, Oliver Rübel, Gunther H. Weber

Proceedings of the 12th IEEE Symposium on Large Data Analysis and Visualization, 2022

2021

Scalable Contour Tree Computation by Data Parallel Peak Pruning.

Hamish A. Carr, Gunther H. Weber, Christopher M. Sewell, Oliver Rübel, Patricia K. Fasel, James P. Ahrens

IEEE Trans. Vis. Comput. Graph., 2021

2020

Data Parallel Hypersweeps for in Situ Topological Analysis.

Petar Hristov, Gunther H. Weber, Hamish A. Carr, Oliver Rübel, James P. Ahrens

Proceedings of the 10th IEEE Symposium on Large Data Analysis and Visualization, 2020

Predicting and Comparing the Performance of Array Management Libraries.

Donghe Kang, Oliver Rübel, Suren Byna, Spyros Blanas

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020

2019

HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards.

Andrew J. Tritt, Oliver Rübel, Benjamin K. Dichter, Ryan Ly, Donghe Kang, Edward F. Chang, Loren M. Frank, Kristofer E. Bouchard

Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

2018

BASTet: Shareable and Reproducible Analysis and Visualization of Mass Spectrometry Imaging Data via OpenMSI.

Oliver Rübel, Benjamin P. Bowen

IEEE Trans. Vis. Comput. Graph., 2018

International Neuroscience Initiatives through the Lens of High-Performance Computing.

Kristofer E. Bouchard, James B. Aimone, Miyoung Chun, Thomas Dean, Michael Denker, Markus Diesmann, David Donofrio, Loren M. Frank, Narayanan Kasthuri, Christof Koch, Oliver Rübel, Horst D. Simon, Friedrich T. Sommer, Prabhat

Computer, 2018

2016

Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience.

Oliver Rübel, Max Dougherty, Prabhat, Peter Denes, David Conant, Edward F. Chang, Kristofer E. Bouchard

Frontiers Neuroinformatics, 2016

WarpIV: In Situ Visualization and Analysis of Ion Accelerator Simulations.

Oliver Rübel, Burlen Loring, Jean-Luc Vay, David P. Grote, Rémi Lehe, Stepan Bulanov, Henri Vincenti, E. Wes Bethel

IEEE Computer Graphics and Applications, 2016

A Multi-Platform Evaluation of the Randomized CX Low-Rank Matrix Factorization in Spark.

Alex Gittens, Jey Kottalam, Jiyan Yang, Michael F. Ringenburg, Jatin Chhugani, Evan Racah, Mohitdeep Singh, Yushu Yao, Curt Fischer, Oliver Rübel, Benjamin P. Bowen, Norman G. Lewis, Michael W. Mahoney, Venkat Krishnamurthy, Prabhat

Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

Usage Pattern-Driven Dynamic Data Layout Reorganization.

Houjun Tang, Surendra Byna, Steve Harenberg, Xiaocheng Zou, Wenzhao Zhang, Kesheng Wu, Bin Dong, Oliver Rübel, Kristofer E. Bouchard, Scott Klasky, Nagiza F. Samatova

Proceedings of the IEEE/ACM 16th International Symposium on Cluster, 2016

2014

Feature-Based Analysis of Plasma-Based Particle Acceleration Data.

Oliver Rübel, Cameron G. R. Geddes, Min Chen, Estelle Cormier-Michel, E. Wes Bethel

IEEE Trans. Vis. Comput. Graph., 2014

2013

A big data approach to analyzing market volatility.

Kesheng Wu, E. Wes Bethel, Ming Gu, David Leinweber, Oliver Rübel

Algorithmic Finance, 2013

Why high performance visual data analytics is both relevant and difficult.

E. Wes Bethel, Prabhat, Surendra Byna, Oliver Rübel, K. John Wu, Michael F. Wehner

Proceedings of the Visualization and Data Analysis 2013, 2013

2012

TECA: A Parallel Toolkit for Extreme Climate Analysis.

Prabhat, Oliver Rübel, Surendra Byna, Kesheng Wu, Fuyu Li, Michael F. Wehner, Wes Bethel

Proceedings of the International Conference on Computational Science, 2012

A System for Query Based Analysis and Visualization.

Allen R. Sanderson, Brad Whitlock, Oliver Rübel, Hank Childs, Gunther H. Weber, Prabhat, Kenseng Wu

Proceedings of the 3rd International EuroVis Workshop on Visual Analytics, 2012

Parallel I/O, analysis, and visualization of a trillion particle simulation.

Surendra Byna, Jerry Chi-Yuan Chou, Oliver Rübel, Prabhat, Homa Karimabadi, William S. Daughton, Vadim Roytershteyn, E. Wes Bethel, Mark Howison, Ke-Jou Hsu, Kuan-Wu Lin, Arie Shoshani, Andrew Uselton, Kesheng Wu

Proceedings of the SC Conference on High Performance Computing Networking, 2012

Query-Driven Visualization and Analysis.

Oliver Rübel, E. Wes Bethel, Kesheng Wu

Proceedings of the High Performance Visualization, 2012

VisIt.

Hank Childs, Eric Brugger, Brad Whitlock, Jeremy S. Meredith, Sean Ahern, David Pugmire, Kathleen Biagas, Mark C. Miller, Cyrus Harrison, Gunther H. Weber, Hari Krishnan, Thomas Fogal, Allen R. Sanderson, Christoph Garth, E. Wes Bethel, David Camp, Oliver Rübel, Marc Durant, Jean M. Favre, Paul A. Navrátil

Proceedings of the High Performance Visualization, 2012

Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data.

Oliver Rübel, Soile V. E. Keränen, Mark D. Biggin, David W. Knowles, Gunther H. Weber, Hans Hagen, Bernd Hamann, E. Wes Bethel

Proceedings of the Visualization in Medicine and Life Sciences II, 2012

2011

Parallel index and query for large scale data analysis.

Jerry Chi-Yuan Chou, Mark Howison, Brian Austin, Kesheng Wu, Ji Qiang, E. Wes Bethel, Arie Shoshani, Oliver Rübel, Prabhat, Robert D. Ryne

Proceedings of the Conference on High Performance Computing Networking, 2011

Federal market information technology in the post flash crash era: roles for supercomputing.

E. Wes Bethel, David Leinweber, Oliver Rübel, Kesheng Wu

Proceedings of the WHPCF'11, 2011

2010

Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data.

Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Mark D. Biggin, Charless C. Fowlkes, Cris L. Luengo Hendriks, Soile V. E. Keränen, Michael B. Eisen, David W. Knowles, Jitendra Malik, Hans Hagen, Bernd Hamann

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data.

Oliver Rübel, Sean Ahern, E. Wes Bethel, Mark D. Biggin, Hank Childs, Estelle Cormier-Michel, Angela H. DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G. R. Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V. E. Keränen, David W. Knowles, Cris L. Luengo Hendriks, Jitendra Malik, Jeremy S. Meredith, Peter Messmer, Prabhat

Proceedings of the International Conference on Computational Science, 2010

2009

Linking automated data analysis and visualization with applications in developmental biology and high-energy physics.

Oliver Rübel

PhD thesis, 2009

Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views.

Gunther H. Weber, Oliver Rübel, Min-Yu Huang, Angela H. DePace, Charless C. Fowlkes, Soile V. E. Keränen, Cris L. Luengo Hendriks, Hans Hagen, David W. Knowles, Jitendra Malik, Mark D. Biggin, Bernd Hamann

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

2008

High performance multivariate visual data exploration for extremely large data.

Oliver Rübel, Prabhat, Kesheng Wu, Hank Childs, Jeremy S. Meredith, Cameron G. R. Geddes, Estelle Cormier-Michel, Sean Ahern, Gunther H. Weber, Peter Messmer, Hans Hagen, Bernd Hamann, E. Wes Bethel

Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

Automated Analysis for Detecting Beams in Laser Wakefield Simulations.

Daniela Mayumi Ushizima, Oliver Rübel, Prabhat, Gunther H. Weber, E. Wes Bethel, Cecilia R. Aragon, Cameron G. R. Geddes, Estelle Cormier-Michel, Bernd Hamann, Peter Messmer, Hans Hagen

Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

Segmenting Gene Expression Patterns of Early-stage Drosophila Embryos.

Min-Yu Huang, Oliver Rübel, Gunther H. Weber, Cris L. Luengo Hendriks, Mark D. Biggin, Hans Hagen, Bernd Hamann

Proceedings of the Visualization in Medicine and Life Sciences., 2008

2007

PointCloudXplore 2: Visual Exploration of 3D Gene Expression.

Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Angela H. DePace, Lisa Simirenko, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Jitendra Malik, David W. Knowles, Bernd Hamann

Proceedings of the Visualization of Large and Unstructured Data Sets: Second workshop of the DFG's International Research Training Group "Visualization of Large and Unstructured Data Sets, 2007

2006

PointCloudXplore: A Visualization Tool for 3D Gene Expression Data.

Oliver Rübel, Gunther H. Weber, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Lisa Simirenko, Nameeta Y. Shah, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Damir Sudar, Jitendra Malik, David W. Knowles, Bernd Hamann

Proceedings of the Visualization of Large and Unstructured Data Sets: Applications in Geospatial Planning, Modeling and Engineering, 2006

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates.

Oliver Rübel, Gunther H. Weber, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Lisa Simirenko, Nameeta Y. Shah, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Damir Sudar, Jitendra Malik, David W. Knowles, Bernd Hamann

Proceedings of the 8th Joint Eurographics - IEEE VGTC Symposium on Visualization, 2006