Olga V. Patterson

Proceedings of the AMIA 2022, 2022

2021

Extracting social determinants of health from electronic health records using natural language processing: a systematic review.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2021

From Emergency Department to Admission: mapping reasons for visit and admit diagnosis using Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Vaping at the VA: Developing an Annotated Corpus of Electronic Cigarette Mentions in Clinical Notes at the Department of Veterans Affairs.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Challenges of comprehensive automatic coding of presenting complaints.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Linking Polyps to Jars: information loss across colonoscopy and pathology reports.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

Removing barriers to clinical text processing with MedSpaCy.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

A Decade of Vaping: Identifying Shifts in Clinical Documentation and Terminology in the Department of Veterans Affairs (2010-2020).

[BibT_eX]

[DOI]

Catherine Chanfreau-Coffinier

Mike Conway

Proceedings of the AMIA 2020, 2020

2019

Automatic Methods to Extract Prescription Status Quality Measures from Unstructured Health Records.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

2018

Hybrid system for adverse drug event detection.

[BibT_eX]

[DOI]

Proceedings of the 1st International Workshop on Medication and Adverse Drug Event Detection, 2018

Flipping the Model for Biomedical Informatics Research.

[BibT_eX]

[DOI]

Benjamin Viernes

Proceedings of the AMIA 2018, 2018

Fast and Accurate Adverse Drug Event labeling without a GPU.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

Towards intuitive NLP: Interactive system for machine teaching.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

Natural Language Processing at Scale - Perspectives from Five Healthcare Organizations.

[BibT_eX]

[DOI]

Rebecca Crowley Jacobson

Proceedings of the AMIA 2018, 2018

A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

Ankle Brachial Index Extraction System.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

2017

Investigating the Documentation of Electronic Cigarette Use in the Veteran Affairs Electronic Health Record: A Pilot Study.

[BibT_eX]

[DOI]

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

For the Common Good: Sharing Data Extracted from Text.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Improving the Quality of Clinical Data Extracted from Text.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Pathology Information Extraction in Bladder Cancer Surveillance.

[BibT_eX]

[DOI]

Terri Elizabeth Workman

Florian Schroeck

Proceedings of the AMIA 2017, 2017

2016

Automatic Extraction of Maximum and Recommended Drug Dosage Information from DailyMed Database.

[BibT_eX]

[DOI]

Lalindra De Silva

Proceedings of the AMIA 2016, 2016

Evaluation of UMLS Term Coverage for Echocardiogram Measures.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

An Introduction to Natural Language Processing Methods in Clinical Research.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

VIP: A Framework for Mining Clinical Concepts Using Knowledge Author Ontologies and Apache UIMA.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Large Scale Clinical Text Processing and Process Optimization.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

2015

Extraction of Vital Signs from Clinical Notes.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Classifying the Indication for Colonoscopy Procedures: A Comparison of NLP Approaches in a Diverse National Healthcare System.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Building custom lexicon for a large number of related concepts using templates.

[BibT_eX]

[DOI]

Matthew Freiberg

Proceedings of the AMIA 2015, 2015

Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

2014

Automatic Engine for Mapping Mycobacteriology Reports to SNOMED-CT.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Machine Learning Made Easy with Sherlock.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Check it with Chex: A Validation Tool for Iterative NLP Development.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Rapid NLP Development with Leo.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

2013

Building a Common Pipeline for Rule-based Document Classification.

[BibT_eX]

[DOI]

Thomas Ginter

Proceedings of the MEDINFO 2013, 2013

Document sublanguage clustering to detect medical specialty in cross-institutional clinical texts.

[BibT_eX]

[DOI]

Kristina Doing-Harris

Sean Igo

John F. Hurdle

Proceedings of the Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, 2013

2012

Identifying Provider Counseling Practices Using Natural Language Processing: Gout Example.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

JMX Analysis Module: Multi-thread aggregate NLP performance monitoring.

[BibT_eX]

[DOI]

Ryan Cornia