Olga G. Troyanskaya
Orcid: 0000-0002-5676-5737
According to our database1,
Olga G. Troyanskaya
authored at least 66 papers
between 2001 and 2023.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2020, "For contributions to computational biology, data integration".
Timeline
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Online presence:
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Bibliography
2023
Interpretable neural architecture search and transfer learning for understanding CRISPR-Cas9 off-target enzymatic reactions.
Nat. Comput. Sci., 2023
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Nat. Comput. Sci., 2023
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Nat. Comput. Sci., 2023
Interpretable neural architecture search and transfer learning for understanding sequence dependent enzymatic reactions.
CoRR, 2023
2021
An automated framework for efficiently designing deep convolutional neural networks in genomics.
Nat. Mach. Intell., 2021
CROTON: an automated and variant-aware deep learning framework for predicting CRISPR/Cas9 editing outcomes.
Bioinform., 2021
2020
Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations.
Bioinform., 2020
2018
A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data.
PLoS Comput. Biol., 2018
Nucleic Acids Res., 2018
2016
Nucleic Acids Res., 2016
2015
IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms.
Bioinform., 2015
2014
PLoS Comput. Biol., 2014
Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction.
Proceedings of the 31th International Conference on Machine Learning, 2014
2013
Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes.
PLoS Comput. Biol., 2013
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies.
Bioinform., 2013
2012
PLoS Comput. Biol., 2012
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.
Nucleic Acids Res., 2012
2011
PLoS Comput. Biol., 2011
Nucleic Acids Res., 2011
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
2010
Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components.
PLoS Comput. Biol., 2010
Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-Depleted Murine Embryonic Stem Cells.
PLoS Comput. Biol., 2010
PLoS Comput. Biol., 2010
Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations.
PLoS Comput. Biol., 2010
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana.
BMC Syst. Biol., 2010
2009
PLoS Comput. Biol., 2009
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in <i>Caenorhabditis elegans</i>.
PLoS Comput. Biol., 2009
Coordinated Concentration Changes of Transcripts and Metabolites in <i>Saccharomyces cerevisiae</i>.
PLoS Comput. Biol., 2009
BMC Bioinform., 2009
Papers on normalization, variable selection, classification or clustering of microarray data.
Bioinform., 2009
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.
Bioinform., 2009
Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields.
Bioinform., 2009
Proceedings of the IEEE Symposium on 3D User Interfaces, 2009
2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
2007
BMC Bioinform., 2007
Bioinform., 2007
Exploring the functional landscape of gene expression: directed search of large microarray compendia.
Bioinform., 2007
Proceedings of the 11th International Conference on Information Visualisation, 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
2006
BMC Bioinform., 2006
A scalable method for integration and functional analysis of multiple microarray datasets.
Bioinform., 2006
Systems Support for Remote Visualization of Genomics Applications over Wide Area Networks.
Proceedings of the Distributed, 2006
2005
IEEE Computer Graphics and Applications, 2005
Visualization-based discovery and analysis of genomic aberrations in microarray data.
BMC Bioinform., 2005
BMC Bioinform., 2005
Briefings Bioinform., 2005
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
Unsupervised Machine Learning to Support Functional Characterization of Genes: Emphasis on Cluster Description and Class Discovery.
Proceedings of the Data Analysis and Visualization in Genomics and Proteomics, 2005
2004
Bioinform., 2004
2002
Nonparametric methods for identifying differentially expressed genes in microarray data.
Bioinform., 2002
Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity.
Bioinform., 2002
2001