Ole Lund

Orcid: 0000-0003-1108-0491

According to our database1, Ole Lund authored at least 42 papers between 1992 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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In proceedings 
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PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2021
Automated download and clean-up of family-specific databases for kmer-based virus identification.
Bioinform., 2021

2019
The COMPARE Data Hubs.
Database J. Biol. Databases Curation, 2019

2018
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.
BMC Bioinform., 2018

Rapid and precise alignment of raw reads against redundant databases with KMA.
BMC Bioinform., 2018

2017
Sequencing and <i>de novo</i> assembly of 150 genomes from Denmark as a population reference.
Nat., 2017

RUCS: rapid identification of PCR primers for unique core sequences.
Bioinform., 2017

2016
ChemProt-3.0: a global chemical biology diseases mapping.
Database J. Biol. Databases Curation, 2016

2015
Reads2Type: a web application for rapid microbial taxonomy identification.
BMC Bioinform., 2015

Automated benchmarking of peptide-MHC class I binding predictions.
Bioinform., 2015

2013
ChemProt-2.0: visual navigation in a disease chemical biology database.
Nucleic Acids Res., 2013

<i>SigniSite</i>: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments.
Nucleic Acids Res., 2013

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach.
Bioinform., 2013

2012
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking.
PLoS Comput. Biol., 2012

Immune epitope database analysis resource.
Nucleic Acids Res., 2012

2011
Immune system simulation online.
Bioinform., 2011

2010
CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles.
Nucleic Acids Res., 2010

Peptide binding predictions for HLA DR, DP and DQ molecules.
BMC Bioinform., 2010

PopCover: a method for selecting of peptides with optimal population and pathogen coverage.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
<i>NN-align</i>. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction.
BMC Bioinform., 2009

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding.
Bioinform., 2009

2008
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan.
PLoS Comput. Biol., 2008

Immune epitope database analysis resource (IEDB-AR).
Nucleic Acids Res., 2008

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11.
Nucleic Acids Res., 2008

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.
Bioinform., 2008

2007
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.
BMC Bioinform., 2007

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.
BMC Bioinform., 2007

Modeling the adaptive immune system: predictions and simulations.
Bioinform., 2007

2006
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.
PLoS Comput. Biol., 2006

The Immune Epitope Database and Analysis Resource.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

2005
Immunological bioinformatics.
Computational molecular biology, AAAI Press, ISBN: 978-0-262-12280-1, 2005

2004
Coronavirus 3CL<sup><i>pro </i></sup>proteinase cleavage sites: Possible relevance to SARS virus pathology.
BMC Bioinform., 2004

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.
Bioinform., 2004

MHC Class I Epitope Binding Prediction Trained on Small Data Sets.
Proceedings of the Artificial Immune Systems, Third International Conference, 2004

2003
Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach.
Neural Comput., 2003

Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks.
Proceedings of the Mathematical Methods for Protein Structure Analysis and Design, 2003

1999
MatrixPlot: visualizing sequence constraints.
Bioinform., 1999

Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998
O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins.
Nucleic Acids Res., 1998

1997
O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins.
Nucleic Acids Res., 1997

1996
O-GLYCBASE: a revised database of O-glycosylated proteins.
Nucleic Acids Res., 1996

1993
Period doubling route to chaos in a model of HIV infection of the immune system: A comment on the Anderson-May model.
Simul. Pract. Theory, 1993

1992
Period Doubling Route to Chaos in a Model of HIV infection of the Immune System.
Proceedings of the Eurosim 1992, Simulation Congress, Proceedings of the 1992 EUROSIM Conference, Capri, Italy, September 28, 1992


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