Olaf Wolkenhauer
Orcid: 0000-0001-6105-2937Affiliations:
- University of Rostock, Germany
According to our database1,
Olaf Wolkenhauer
authored at least 80 papers
between 1997 and 2024.
Collaborative distances:
Collaborative distances:
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Bibliography
2024
J. Cheminformatics, December, 2024
ConvGeN: A convex space learning approach for deep-generative oversampling and imbalanced classification of small tabular datasets.
Pattern Recognit., March, 2024
stanscofi and benchscofi: a new standard for drug repurposing by collaborative filtering.
J. Open Source Softw., February, 2024
Multivariate Functional Linear Discriminant Analysis for the Classification of Short Time Series with Missing Data.
CoRR, 2024
2022
Convex space learning improves deep-generative oversampling for tabular imbalanced classification on smaller datasets.
CoRR, 2022
Melanoma 2.0. Skin cancer as a paradigm for emerging diagnostic technologies, computational modelling and artificial intelligence.
Briefings Bioinform., 2022
IEEE Access, 2022
2021
A multi-schematic classifier-independent oversampling approach for imbalanced datasets.
CoRR, 2021
Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling.
BMC Bioinform., 2021
A Multi-Schematic Classifier-Independent Oversampling Approach for Imbalanced Datasets.
IEEE Access, 2021
Combining uniform manifold approximation with localized affine shadowsampling improves classification of imbalanced datasets.
Proceedings of the International Joint Conference on Neural Networks, 2021
2020
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma.
BMC Bioinform., 2020
2019
Briefings Bioinform., 2019
2018
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.
PLoS Comput. Biol., 2018
Impact of graphene-based nanomaterials (GBNMs) on the structural and functional conformations of hepcidin peptide.
J. Comput. Aided Mol. Des., 2018
Evolution of computational models in BioModels Database and the Physiome Model Repository.
BMC Syst. Biol., 2018
BMC Syst. Biol., 2018
Database J. Biol. Databases Curation, 2018
2017
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Nucleic Acids Res., 2017
2016
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine.
IEEE Trans. Biomed. Eng., 2016
TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation.
BMC Bioinform., 2016
COMODI: an ontology to characterise differences in versions of computational models in biology.
J. Biomed. Semant., 2016
An algorithm to detect and communicate the differences in computational models describing biological systems.
Bioinform., 2016
The RNA world in the 21st century - a systems approach to finding non-coding keys to clinical questions.
Briefings Bioinform., 2016
Briefings Bioinform., 2016
Challenges and opportunities for system biology standards and tools in medical research.
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016
2015
J. Biomed. Semant., 2015
Combining computational models, semantic annotations and simulation experiments in a graph database.
Database J. Biol. Databases Curation, 2015
Proceedings of the Wissenschaft und Kunst der Modellierung, 2015
2014
Anti-inflammatory effects of reactive oxygen species - a multi-valued logical model validated by formal concept analysis.
BMC Syst. Biol., 2014
Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014
2013
Reverse Engineering of Biochemical Reaction Networks Using Co-evolution with Eng-Genes.
Cogn. Comput., 2013
Simulations of stressosome activation emphasize allosteric interactions between RsbR and RsbT.
BMC Syst. Biol., 2013
Bioinform., 2013
2012
Parameter Identifiability and Sensitivity Analysis Predict Targets for Enhancement of STAT1 Activity in Pancreatic Cancer and Stellate Cells.
PLoS Comput. Biol., 2012
Multi-compartmental modeling of SORLA's influence on amyloidogenic processing in Alzheimer's disease.
BMC Syst. Biol., 2012
Considerations of graph-based concepts to manage of computational biology models and associated simulations.
Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012
2011
A model-based strategy to investigate the role of <i>microRNA</i> regulation in cancer signalling networks.
Theory Biosci., 2011
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture.
BMC Syst. Biol., 2011
Modelling Molecular Processes by Individual-Based Simulations Applied to Actin Polymerisation.
Proceedings of the Simulation and Modeling Methodologies, Technologies and Applications, 2011
Agent-based Simulation of Molecular Processes - An Application to Actin-polymerisation.
Proceedings of the SIMULTECH 2011 - Proceedings of 1st International Conference on Simulation and Modeling Methodologies, Technologies and Applications, Noordwijkerhout, The Netherlands, 29, 2011
2010
Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics.
Int. J. Syst. Sci., 2010
Non-coding RNA detection methods combined to improve usability, reproducibility and precision.
BMC Bioinform., 2010
2009
Int. J. Bioinform. Res. Appl., 2009
A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis.
Comput. Biol. Chem., 2009
2008
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway.
BMC Syst. Biol., 2008
The role of dynamic stimulation pattern in the analysis of bistable intracellular networks.
Biosyst., 2008
Ein Beitrag zu einer Theorie lebender Zellen (A Contribution towards a Theory of Living Cells).
Autom., 2008
2007
2006
Information Technology in Systems Biology (Informationstechnologien in der Systembiologie).
it Inf. Technol., 2006
2005
Fuzzy Sets Syst., 2005
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
From Networks to Systems to Complex Systems: A Signaling Pathway Coordination Case Study.
Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005
2004
Advanced significance analysis of microarray data based on weighted resampling: a comparative study and application to gene deletions in Mycobacterium bovis.
Bioinform., 2004
2003
Experimental Design in Systems Biology, Based on Parameter Sensitivity Analysis Using a Monte Carlo Method: A Case Study for the TNFalpha-Mediated NF-kappa B Signal Transduction Pathway.
Simul., 2003
Int. J. Approx. Reason., 2003
Proceedings of the Advances in Intelligent Data Analysis V, 2003
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003
How to Synthesize an Optimized Genetic-Switching System? A System-Theoretic Approach Based on SQP.
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003
2002
2001
Briefings Bioinform., 2001
Proceedings of the 10th IEEE International Conference on Fuzzy Systems, 2001
Proceedings of the Data Fusion and Perception, 2001
Data engineering - fuzzy mathematics in systems theory and data analysis.
Wiley, ISBN: 978-0-471-41656-2, 2001
1997
Intell. Data Anal., 1997
Proceedings of the Advances in Intelligent Data Analysis, 1997