Norio Kobayashi

According to our database, Norio Kobayashi authored at least 41 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph.

Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi

CoRR, 2024

2023

Developing a semantic event search engine for biomedical events.

Julio Cesar Rangel Reyes, Norio Kobayashi

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2021

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.

Imad Abugessaisa, Jordan A. Ramilowski, Marina Lizio, Jesicca Severin, Akira Hasegawa, Jayson Harshbarger, Atsushi Kondo, Shuhei Noguchi, Chi Wai Yip, Jasmine Li Ching Ooi, Michihira Tagami, Fumi Hori, Saumya Agrawal, Chung-Chau Hon, Mélissa Cardon, Shuya Ikeda, Hiromasa Ono, Hidemasa Bono, Masaki Kato, Kosuke Hashimoto, Alessandro Bonetti, Norio Kobayashi, Jay W. Shin, Michiel J. L. de Hoon, Yoshihide Hayashizaki, Piero Carninci, Hideya Kawaji, Takeya Kasukawa

Nucleic Acids Res., 2021

2019

ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks.

Masahiko Morita, Kazuro Shimokawa, Masaomi Nishimura, Sakiko Nakamura, Yuki Tsujimura, Satoko Takemoto, Takehiro Tawara, Hideo Yokota, Shuhei Wemler, Daisuke Miyamoto, Hidetoshi Ikeno, Akira Sato, Teiichi Furuichi, Norio Kobayashi, Yoshihiro Okumura, Yoko Shiraishi-Yamaguchi, Yuko Okamura-Oho

Nucleic Acids Res., 2019

On Bringing Bioimaging Data into the Open (World).

Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences.

Norio Kobayashi, Yasunori Yamamoto, Atsuko Yamaguchi

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

OME Core Ontology: An OWL-based Life Science Imaging Data Model.

Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

2018

RIKEN MetaDatabase: A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud.

Norio Kobayashi, Satoshi Kume, Kai Lenz, Hiroshi Masuya

Int. J. Semantic Web Inf. Syst., 2018

2017

LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences.

Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase.

Norio Kobayashi, Satoshi Kume, Hiroshi Masuya

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Semantic Graph Analysis for Federated LOD Surfing in Life Sciences.

Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the Semantic Technology - 7th Joint International Conference, 2017

Development of Semantic Web-Based Imaging Database for Biological Morphome.

Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi

Proceedings of the Semantic Technology - 7th Joint International Conference, 2017

2016

SPARQL Query Construction with Monitoring Service for Endpoints.

Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

A RDF based Portal of Biological Phenotype Data produced in Japan.

Terue Takatsuki, Mikako Saito, Sadahiro Kumagai, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Norio Kobayashi, Hiroshi Masuya

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

RIKEN MetaDatabase: a Database Publication Platform for RIKENs Life-science Researchers that Promotes Research Collaborations over Different Research Area.

Kai Lenz, Hiroshi Masuya, Norio Kobayashi

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data.

Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the Workshop and Poster Proceedings of the 6th Joint International Semantic Technology Conference co-located with the 6th Joint International Semantic Technology Conference (JIST 2016), 2016

Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the Semantic Technology - 6th Joint International Conference, 2016

RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences.

Norio Kobayashi, Kai Lenz, Hiroshi Masuya

Proceedings of the Workshop and Poster Proceedings of the 6th Joint International Semantic Technology Conference co-located with the 6th Joint International Semantic Technology Conference (JIST 2016), 2016

2015

RDF-Based Integration with SPARQL Building System for Life Science Database Archive.

Atsuko Yamaguchi, Katsuhiko Okubo, Norio Kobayashi, Kouji Kozaki, Sadahiro Kumagai, Kai Lenz, Tomoe Nobusada, Hongyan Wu, Yasunori Yamamoto, Hideki Hatanaka

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

RDF-based Data Sharing of Bio-resource Related Information.

Hiroshi Masuya, Terue Takatsuki, Mikako Saito, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Hiroshi Mori, Shuichi Kawashima, Norio Kobayashi

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web.

Norio Kobayashi, Kai Lenz, Hiroshi Masuya

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Hongyan Wu, Yasunori Yamamoto, Norio Kobayashi

Proceedings of the Semantic Technology - 5th Joint International Conference, 2015

2014

Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets.

Norio Kobayashi, Kai Lenz, Hongyan Wu, Kouji Kozaki, Atsuko Yamaguchi

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Hongyan Wu, Norio Kobayashi

Proceedings of the 3rd International Workshop on Intelligent Exploration of Semantic Data (IESD 2014) co-located with the 13th International Semantic Web Conference (ISWC 2014), 2014

2013

PosMed: ranking genes and bioresources based on Semantic Web Association Study.

Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda

Nucleic Acids Res., 2013

PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web.

Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

2012

Development of Linked Open Data for Bioresources.

Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata

Proceedings of the Semantic Technology, Second Joint International Conference, 2012

2011

The RIKEN integrated database of mammals.

Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda

Nucleic Acids Res., 2011

Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases.

Norio Kobayashi, Manabu Ishii, Satoshi Takahashi, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda

Nucleic Acids Res., 2011

BioSPARQL: ontology-based smart building of SPARQL queries for biological linked open data.

Norio Kobayashi, Tetsuro Toyoda

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

An Advanced Strategy for Integration of Biological Measurement Data.

Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.

Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda

Nucleic Acids Res., 2009

OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.

Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda

Nucleic Acids Res., 2009

2008

Statistical search on the Semantic Web.

Norio Kobayashi, Tetsuro Toyoda

Bioinform., 2008

Penta and Hexa Statements are Suitable for Representing Omics Knowledge on the Semantic Web.

Norio Kobayashi, Tetsuro Toyoda

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web.

Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

2007

OmicBrowse: a browser of multidimensional omics annotations.

Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Norio Kobayashi, Yoshiyuki Sakaki

Bioinform., 2007

2006

On the Development of an Analysis System for Upstream Sequences in <i>Dictyostelium discoideum</i> Genome.

Norio Kobayashi, Mircea Marin, Yoshimasa Tanaka, Hideko Urushihara

Inf. Media Technol., 2006

2001

Collaborative Constraint Functional Logic Programming in an Open Environment.

Norio Kobayashi, Mircea Marin, Tetsuo Ida

Proceedings of the Second Asian Workshop on Programming Languages and Systems, 2001