Nils Gehlenborg

According to our database, Nils Gehlenborg authored at least 61 papers between 2005 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Cell2Cell: Explorative Cell Interaction Analysis in Multi-Volumetric Tissue Data.

Eric Mörth, Kevin Sidak, Zoltan Maliga, Torsten Möller, Nils Gehlenborg, Peter K. Sorger, Hanspeter Pfister, Johanna Beyer, Robert Krüger

IEEE Trans. Vis. Comput. Graph., January, 2025

A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies.

Trevor Manz, Fritz Lekschas, Evan Greene, Greg Finak, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., January, 2025

Learnable and Expressive Visualization Authoring Through Blended Interfaces.

Sehi L'Yi, Astrid van den Brandt, Etowah Adams, Huyen N. Nguyen, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., January, 2025

Understanding Visualization Authoring Techniques for Genomics Data in the Context of Personas and Tasks.

Astrid van den Brandt, Sehi L'Yi, Huyen N. Nguyen, Anna Vilanova, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., January, 2025

2024

anywidget: reusable widgets for interactive analysis and visualization in computational notebooks.

Trevor Manz, Nezar Abdennur, Nils Gehlenborg

J. Open Source Softw., 2024

Explaining Unfamiliar Genomics Data Visualizations to a Blind Individual through Transitions.

Thomas C. Smits, Sehi L'Yi, Huyen N. Nguyen, Andrew P. Mar, Nils Gehlenborg

Proceedings of the 1st Workshop on Accessible Data Visualization, 2024

Use-Coordination: Model, Grammar, and Library for Implementation of Coordinated Multiple Views.

Mark S. Keller, Trevor Manz, Nils Gehlenborg

Proceedings of the IEEE Visualization and Visual Analytics, 2024

2023

Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.

Sehi L'Yi, Mark S. Keller, Ariaki Dandawate, Len Taing, Chen-Hao Chen, Myles Brown, Clifford A. Meyer, Nils Gehlenborg

Bioinform., February, 2023

Gos: a declarative library for interactive genomics visualization in Python.

Trevor Manz, Sehi L'Yi, Nils Gehlenborg

Bioinform., January, 2023

Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing.

Qianwen Wang, Kexin Huang, Payal Chandak, Marinka Zitnik, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., 2023

GenoREC: A Recommendation System for Interactive Genomics Data Visualization.

Aditeya Pandey, Sehi L'Yi, Qianwen Wang, Michelle A. Borkin, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., 2023

Multi-View Design Patterns and Responsive Visualization for Genomics Data.

Sehi L'Yi, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., 2023

Polyphony: an Interactive Transfer Learning Framework for Single-Cell Data Analysis.

Furui Cheng, Mark S. Keller, Huamin Qu, Nils Gehlenborg, Qianwen Wang

IEEE Trans. Vis. Comput. Graph., 2023

Beyond Generating Code: Evaluating GPT on a Data Visualization Course.

Zhutian Chen, Chenyang Zhang, Qianwen Wang, Jakob Troidl, Simon Warchol, Johanna Beyer, Nils Gehlenborg, Hanspeter Pfister

CoRR, 2023

Enabling Multimodal User Interactions for Genomics Visualization Creation.

Qianwen Wang, Xiao Liu, Man Qing Liang, Sehi L'Yi, Nils Gehlenborg

Proceedings of the 2023 IEEE Visualization and Visual Analytics (VIS), 2023

The Role of Visualization in Genomics Data Analysis Workflows: The Interviews.

Sehi L'Yi, Qianwen Wang, Nils Gehlenborg

Proceedings of the 2023 IEEE Visualization and Visual Analytics (VIS), 2023

DRAVA: Aligning Human Concepts with Machine Learning Latent Dimensions for the Visual Exploration of Small Multiples.

Qianwen Wang, Sehi L'Yi, Nils Gehlenborg

Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, 2023

2022

ThreadStates: State-based Visual Analysis of Disease Progression.

Qianwen Wang, Tali Mazor, Theresa Anisja Harbig, Ethan Cerami, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., 2022

Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.

Sehi L'Yi, Qianwen Wang, Fritz Lekschas, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., 2022

International electronic health record-derived post-acute sequelae profiles of COVID-19 patients.

Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber

npj Digit. Medicine, 2022

2021

A Generic Framework and Library for Exploration of Small Multiples through Interactive Piling.

Fritz Lekschas, Xinyi Zhou, Wei Chen, Nils Gehlenborg, Benjamin Bach, Hanspeter Pfister

IEEE Trans. Vis. Comput. Graph., 2021

Making Tools that People Will Use: User-Centered Design in Computational Biology Research.

Mary Goldman, Nils Gehlenborg

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets.

Fritz Lekschas, Michael Behrisch, Benjamin Bach, Peter Kerpedjiev, Nils Gehlenborg, Hanspeter Pfister

IEEE Trans. Vis. Comput. Graph., 2020

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.

Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Estève, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane

npj Digit. Medicine, 2020

Peax : Interactive Visual Pattern Search in Sequential Data Using Unsupervised Deep Representation Learning.

Fritz Lekschas, Brant Peterson, Daniel Haehn, Eric Ma, Nils Gehlenborg, Hanspeter Pfister

Comput. Graph. Forum, 2020

2019

Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.

Carolina Nobre, Nils Gehlenborg, Hilary Coon, Alexander Lex

IEEE Trans. Vis. Comput. Graph., 2019

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson

Nat., 2019

Tasks, Techniques, and Tools for Genomic Data Visualization.

Sabrina Nusrat, Theresa Anisja Harbig, Nils Gehlenborg

Comput. Graph. Forum, 2019

Periphery Plots for Contextualizing Heterogeneous Time-Based Charts.

Bryce Morrow, Trevor Manz, Arlene E. Chung, Nils Gehlenborg, David Gotz

Proceedings of the 30th IEEE Visualization Conference, 2019

Precision VISSTA: Machine Learning Prediction and Inference for Bring-Your-Own-Device (BYOD) mHealth Data.

Tim Coleman, Lucas Mentch, Kimberly Glass, David Gotz, Nils Gehlenborg, Arlene E. Chung

Proceedings of the AMIA 2019, 2019

Precision VISSTA: Bring-Your-Own-Device (BYOD) mHealth Data for Precision Health.

Arlene E. Chung, Kimberly Glass, Jacob Leisey-Bartsch, Lucas Mentch, Nils Gehlenborg, David Gotz

Proceedings of the AMIA 2019, 2019

2018

HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples.

Fritz Lekschas, Benjamin Bach, Peter Kerpedjiev, Nils Gehlenborg, Hanspeter Pfister

IEEE Trans. Vis. Comput. Graph., 2018

Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161).

Jan Aerts, Nils Gehlenborg, Georgeta Elisabeta Marai, Kay Katja Nieselt

Dagstuhl Reports, 2018

SATORI: a system for ontology-guided visual exploration of biomedical data repositories.

Fritz Lekschas, Nils Gehlenborg

Bioinform., 2018

Visual Pattern-Driven Exploration of Big Data.

Michael Behrisch, Robert Krüger, Fritz Lekschas, Tobias Schreck, Nils Gehlenborg, Hanspeter Pfister

Proceedings of the 2018 International Symposium on Big Data Visual and Immersive Analytics, 2018

Data Science in Biomedical Informatics Education: Critical Problems and Innovative Solutions.

Harry Hochheiser, Javed Mostafa, Nils Gehlenborg, Shannon K. McWeeney, Valerie Florance

Proceedings of the AMIA 2018, 2018

2017

Interactive visual exploration and refinement of cluster assignments.

Michael Kern, Alexander Lex, Nils Gehlenborg, Chris R. Johnson

BMC Bioinform., 2017

UpSetR: an R package for the visualization of intersecting sets and their properties.

Jake R. Conway, Alexander Lex, Nils Gehlenborg

Bioinform., 2017

2016

AVOCADO: Visualization of Workflow-Derived Data Provenance for Reproducible Biomedical Research.

Holger Stitz, S. Luger, Marc Streit, Nils Gehlenborg

Comput. Graph. Forum, 2016

From Visual Exploration to Storytelling and Back Again.

Samuel Gratzl, Alexander Lex, Nils Gehlenborg, Nicola Cosgrove, Marc Streit

Comput. Graph. Forum, 2016

TaCo: Comparative Visualization of Large Tabular Data.

Reem Hourieh, Holger Stitz, Nils Gehlenborg, Marc Streit

Proceedings of the 18th Eurographics Conference on Visualization, 2016

Session Introduction.

Arjun K. Manrai, Chirag J. Patel, Nils Gehlenborg, Nicholas P. Tatonetti, John P. A. Ioannidis, Isaac S. Kohane

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2014

UpSet: Visualization of Intersecting Sets.

Alexander Lex, Nils Gehlenborg, Hendrik Strobelt, Romain Vuillemot, Hanspeter Pfister

IEEE Trans. Vis. Comput. Graph., 2014

Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular Datasets.

Samuel Gratzl, Nils Gehlenborg, Alexander Lex, Hanspeter Pfister, Marc Streit

IEEE Trans. Vis. Comput. Graph., 2014

Comparative analysis of metazoan chromatin organization Open.

Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park

Nat., 2014

Ontologies in Biological Data Visualization.

Sheelagh Carpendale, Min Chen, Daniel Evanko, Nils Gehlenborg, Carsten Görg, Lawrence Hunter, Francis Rowland, Margaret-Anne D. Storey, Hendrik Strobelt

IEEE Computer Graphics and Applications, 2014

2013

LineUp: Visual Analysis of Multi-Attribute Rankings.

Samuel Gratzl, Alexander Lex, Nils Gehlenborg, Hanspeter Pfister, Marc Streit

IEEE Trans. Vis. Comput. Graph., 2013

Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator.

Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg

PLoS Comput. Biol., 2013

Nozzle: a report generation toolkit for data analysis pipelines.

Nils Gehlenborg, Michael S. Noble, Gad Getz, Lynda Chin, Peter J. Park

Bioinform., 2013

2012

StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization.

Alexander Lex, Marc Streit, Hans-Jörg Schulz, Christian Partl, Dieter Schmalstieg, Peter J. Park, Nils Gehlenborg

Comput. Graph. Forum, 2012

Data-driven information retrieval in heterogeneous collections of transcriptomics data links <i>SIM2s</i> to malignant pleural mesothelioma.

José Caldas, Nils Gehlenborg, Eeva Kettunen, Ali Faisal, Mikko Rönty, Andrew G. Nicholson, Sakari Knuutila, Alvis Brazma, Samuel Kaski

Bioinform., 2012

2010

An information retrieval perspective on visualization of gene expression data with ontological annotation.

Jaakko Peltonen, Helena Aidos, Nils Gehlenborg, Alvis Brazma, Samuel Kaski

Proceedings of the IEEE International Conference on Acoustics, 2010

2009

Visualization of large microarray experiments with space maps.

Nils Gehlenborg, Alvis Brazma

BMC Bioinform., 2009

Probabilistic retrieval and visualization of biologically relevant microarray experiments.

José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski

BMC Bioinform., 2009

Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.

Nils Gehlenborg, Wei Yan, Inyoul Y. Lee, Hyuntae Yoo, Kay Nieselt, Daehee Hwang, Ruedi Aebersold, Leroy Hood

Bioinform., 2009

The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases.

Nils Gehlenborg, Daehee Hwang, Inyoul Y. Lee, Hyuntae Yoo, David Baxter, Brianne Petritis, Rose Pitstick, Bruz Marzolf, Stephen J. DeArmond, George Carlson, Leroy Hood

Database J. Biol. Databases Curation, 2009

2008

Ten Simple Rules for Organizing a Scientific Meeting.

Manuel Corpas, Nils Gehlenborg, Sarath Chandra Janga, Philip E. Bourne

PLoS Comput. Biol., 2008

Highlights from the Fourth International Society for Computational Biology Student Council Symposium at the Sixteenth Annual International Conference on Intelligent Systems for Molecular Biology.

Lucia Peixoto, Nils Gehlenborg, Sarath Chandra Janga

BMC Bioinform., 2008

2007

Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology.

Nils Gehlenborg, Manuel Corpas, Sarath Chandra Janga

BMC Bioinform., 2007

2006

Mayday-a microarray data analysis workbench.

Janko Dietzsch, Nils Gehlenborg, Kay Nieselt

Bioinform., 2006

2005

A Framework for Visualization of Microarray Data and Integrated Meta Information.

Nils Gehlenborg, Janko Dietzsch, Kay Nieselt

Inf. Vis., 2005