Nilgun Donmez

According to our database, Nilgun Donmez authored at least 8 papers between 2011 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

The evolutionary history of 2,658 cancers.

Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo

Nat., 2020

2017

Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data.

Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, Süleyman Cenk Sahinalp

J. Comput. Biol., 2017

2015

Clonality inference in multiple tumor samples using phylogeny.

Salem Malikic, Andrew W. McPherson, Nilgun Donmez, S. Cenk Sahinalp

Bioinform., 2015

2014

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2014

2013

SCARPA: scaffolding reads with practical algorithms.

Nilgun Donmez, Michael Brudno

Bioinform., 2013

2012

Polymorphism and Genome Assembly.

Nilgun Donmez

PhD thesis, 2012

Concepture: A Regular Language Based Framework for Recognizing Gestures with Varying and Repetitive Patterns.

Nilgun Donmez, Karan Singh

Proceedings of the 9th International Symposium on Sketch-Based Interfaces and Modeling, 2012

2011

Hapsembler: An Assembler for Highly Polymorphic Genomes.

Nilgun Donmez, Michael Brudno

Proceedings of the Research in Computational Molecular Biology, 2011