Nikolai Nøjgaard

According to our database, Nikolai Nøjgaard authored at least 15 papers between 2017 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Automated Inference of Graph Transformation Rules.

Jakob L. Andersen, Akbar Davoodi, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard

CoRR, 2024

2022

Generic Context-Aware Group Contributions.

Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Peter F. Stadler

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Representing Catalytic Mechanisms with Rule Composition.

Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard

J. Chem. Inf. Model., 2022

Characterizing Catalytic Mechanisms with Overlay Graphs.

Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard

CoRR, 2022

Efficient Modular Graph Transformation Rule Application.

Jakob L. Andersen, Rolf Fagerberg, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard

CoRR, 2022

2021

Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry.

Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle

J. Comput. Biol., 2021

Graph transformation for enzymatic mechanisms.

Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard

Bioinform., 2021

Combining Orthology and Xenology Data in a Common Phylogenetic Tree.

Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2021

2020

A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework.

Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti

Proceedings of the SOFSEM 2020 Doctoral Student Research Forum co-located with the 46th International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM 2020), 2020

Atom Tracking Using Cayley Graphs.

Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard

Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

2018

Time-consistent reconciliation maps and forbidden time travel.

Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth

Algorithms Mol. Biol., 2018

Partial Homology Relations - Satisfiability in Terms of Di-Cographs.

Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth

Proceedings of the Computing and Combinatorics - 24th International Conference, 2018

Linear Time Canonicalization and Enumeration of Non-Isomorphic 1-Face Embeddings.

Marc Hellmuth, Anders S. Knudsen, Michal Kotrbcík, Daniel Merkle, Nikolai Nøjgaard

Proceedings of the Twentieth Workshop on Algorithm Engineering and Experiments, 2018

2017

Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs.

Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth

CoRR, 2017

Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps.

Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017