Nicolas Le Novère

According to our database, Nicolas Le Novère authored at least 76 papers between 1999 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Synthetic biology open language visual (SBOL Visual) version 2.3.

Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2021

2020

Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies.

Lu Li, Massimo Lai, Stephen Cole, Nicolas Le Novère, Stuart J. Edelstein

PLoS Comput. Biol., 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2020

2019

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat

J. Integr. Bioinform., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.

Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang

J. Integr. Bioinform., 2019

Community-driven roadmap for integrated disease maps.

Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider

Briefings Bioinform., 2019

2018

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.

Vasundra Touré, Nicolas Le Novère, Dagmar Waltemath, Olaf Wolkenhauer

PLoS Comput. Biol., 2018

BioModels: expanding horizons to include more modelling approaches and formats.

Mihai Glont, Tung V. N. Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne, Varun B. Kothamachu, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S. Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob

Nucleic Acids Res., 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.

Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath

J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson

J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson

J. Integr. Bioinform., 2018

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat

J. Integr. Bioinform., 2018

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).

Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath

J. Integr. Bioinform., 2018

2017

SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks.

Piero Dalle Pezze, Nicolas Le Novère

BMC Syst. Biol., 2017

A brief history of COMBINE.

Chris J. Myers, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, David P. Nickerson, Falk Schreiber, Dagmar Waltemath

Proceedings of the 2017 Winter Simulation Conference, 2017

2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath

J. Integr. Bioinform., 2016

The systems biology format converter.

Nicolas Rodriguez, Jean-Baptiste Pettit, Piero Dalle Pezze, Lu Li, Arnaud Henry, Martijn P. van Iersel, Gaël Jalowicki, Martina Kutmon, Kedar Nath Natarajan, David Tolnay, Melanie I. Stefan, Chris T. A. Evelo, Nicolas Le Novère

BMC Bioinform., 2016

2015

Modulation of Calmodulin Lobes by Different Targets: An Allosteric Model with Hemiconcerted Conformational Transitions.

Massimo Lai, Denis Brun, Stuart J. Edelstein, Nicolas Le Novère

PLoS Comput. Biol., 2015

BioModels: ten-year anniversary.

Vijayalakshmi Chelliah, Nick S. Juty, Ishan Ajmera, Raza Ali, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah M. Keating, Vincent Knight-Schrijver, Audald Lloret-Villas, Kedar Nath Natarajan, Jean-Baptiste Pettit, Nicolas Rodriguez, Michael Schubert, Sarala M. Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère, Camille Laibe

Nucleic Acids Res., 2015

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.

Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger

J. Integr. Bioinform., 2015

Specifications of Standards in Systems and Synthetic Biology.

Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise

J. Integr. Bioinform., 2015

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.

Stuart L. Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi, Alice Villéger

J. Integr. Bioinform., 2015

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .

Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger

J. Integr. Bioinform., 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson

J. Integr. Bioinform., 2015

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.

Claudine Chaouiya, Sarah M. Keating, Duncan Bérenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar

J. Integr. Bioinform., 2015

COMBINE Archive Specification Version 1.

Frank T. Bergmann, Nicolas Rodriguez, Nicolas Le Novère

J. Integr. Bioinform., 2015

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.

Frank T. Bergmann, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson, Dagmar Waltemath

J. Integr. Bioinform., 2015

SPARQL-enabled identifier conversion with Identifiers.org.

Sarala M. Wimalaratne, Jerven T. Bolleman, Nick S. Juty, Toshiaki Katayama, Michel Dumontier, Nicole Redaschi, Nicolas Le Novère, Henning Hermjakob, Camille Laibe

Bioinform., 2015

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.

Nicolas Rodriguez, Alex Thomas, Leandro H. Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Harold F. Gómez, Florian Mittag, Jakob Matthes, Jan Rudolph, Finja Wrzodek, Eugen Netz, Alexander Diamantikos, Johannes Eichner, Roland Keller, Clemens Wrzodek, Sebastian Fröhlich, Nathan E. Lewis, Chris J. Myers, Nicolas Le Novère, Bernhard Ø. Palsson, Michael Hucka, Andreas Dräger

Bioinform., 2015

2014

Simulation Experiment Description Markup Language (SED-ML).

Dagmar Waltemath, Nicolas Le Novère

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

BioModels Database: a public repository for sharing models of biological processes.

Vijayalakshmi Chelliah, Nick S. Juty, Camille Laibe, Henning Hermjakob, Nicolas Le Novère

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

COMBINE archive: One File To Share Them All.

Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère

CoRR, 2014

BioModels linked dataset.

Sarala M. Wimalaratne, Pierre Grenon, Henning Hermjakob, Nicolas Le Novère, Camille Laibe

BMC Syst. Biol., 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère

BMC Bioinform., 2014

The EBI RDF platform: linked open data for the life sciences.

Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson

Bioinform., 2014

2013

Cooperative Binding.

Melanie I. Stefan, Nicolas Le Novère

PLoS Comput. Biol., 2013

SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations.

Joachim von Eichborn, Mathias Dunkel, Björn O. Gohlke, Sarah C. Preissner, Michael F. Hoffmann, Jakob M. J. Bauer, J. Douglas Armstrong, Martin H. Schaefer, Miguel A. Andrade-Navarro, Nicolas Le Novère, Michael D. R. Croning, Seth G. N. Grant, Pim van Nierop, August B. Smit, Robert Preissner

Nucleic Acids Res., 2013

Structure, function, and behaviour of computational models in systems biology.

Christian Knüpfer, Clemens Beckstein, Peter Dittrich, Nicolas Le Novère

BMC Syst. Biol., 2013

The systems biology simulation core algorithm.

Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard R. Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger

BMC Syst. Biol., 2013

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar

BMC Syst. Biol., 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.

Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère

BMC Syst. Biol., 2013

Towards the Collaborative Curation of the Registry underlying identifiers.org.

Nick S. Juty, Nicolas Le Novère, Henning Hermjakob, Camille Laibe

Database J. Biol. Databases Curation, 2013

2012

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.

Nick S. Juty, Nicolas Le Novère, Camille Laibe

Nucleic Acids Res., 2012

Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON.

Michele Mattioni, Uri Cohen, Nicolas Le Novère

Frontiers Neuroinformatics, 2012

MELTING, a flexible platform to predict the melting temperatures of nucleic acids.

Marine Dumousseau, Nicolas Rodriguez, Nick S. Juty, Nicolas Le Novère

BMC Bioinform., 2012

Software support for SBGN maps: SBGN-ML and LibSBGN.

Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber

Bioinform., 2012

Qualitative translation of relations from BioPAX to SBML qual.

Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez, Nicolas Le Novère, Andreas Zell

Bioinform., 2012

Delivering 'Cool URIs' That Do Not Change.

Nick S. Juty, Nicolas Le Novère, Henning Hermjakob, Camille Laibe

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies.

Janna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan, Barry Smith

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Considerations of graph-based concepts to manage of computational biology models and associated simulations.

Ron Henkel, Nicolas Le Novère, Olaf Wolkenhauer, Dagmar Waltemath

Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012

2011

Minimum Information About a Simulation Experiment (MIASE).

Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère

PLoS Comput. Biol., 2011

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.

Dagmar Waltemath, Richard R. Adams, Frank T. Bergmann, Michael Hucka, Fedor A. Kolpakov, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Sven Sahle, Jacky L. Snoep, Nicolas Le Novère

BMC Syst. Biol., 2011

JSBML: a flexible Java library for working with SBML.

Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka

Bioinform., 2011

2010

Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP.

Dominic P. Tolle, Nicolas Le Novère

BMC Syst. Biol., 2010

Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes.

Dominic P. Tolle, Nicolas Le Novère

BMC Syst. Biol., 2010

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.

Chen Li, Marco Donizelli, Nicolas Rodriguez, Harish Dharuri, Lukas Endler, Vijayalakshmi Chelliah, Lu Li, Enuo He, Arnaud Henry, Melanie I. Stefan, Jacky L. Snoep, Michael Hucka, Nicolas Le Novère, Camille Laibe

BMC Syst. Biol., 2010

Ranked retrieval of Computational Biology models.

Ron Henkel, Lukas Endler, André Peters, Nicolas Le Novère, Dagmar Waltemath

BMC Bioinform., 2010

BioModels.net Web Services, a free and integrated toolkit for computational modelling software.

Chen Li, Mélanie Courtot, Nicolas Le Novère, Camille Laibe

Briefings Bioinform., 2010

2009

Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters.

Melanie I. Stefan, Stuart J. Edelstein, Nicolas Le Novère

BMC Syst. Biol., 2009

Data Integration and Semantic Enrichment of Systems Biology Models and Simulations.

Vijayalakshmi Chelliah, Lukas Endler, Nick S. Juty, Camille Laibe, Chen Li, Nicolas Rodriguez, Nicolas Le Novère

Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

2008

Multiscale Modelling of Neuronal Signalling.

Nicolas Le Novère

Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

SED-ML - An XML Format for the Implementation of the MIASE Guidelines.

Dagmar Köhn, Nicolas Le Novère

Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

2007

Molecules for memory: modelling CaMKII.

Melanie I. Stefan, Nicolas Le Novère

BMC Syst. Biol., 2007

The long journey to a Systems Biology of neuronal function.

Nicolas Le Novère

BMC Syst. Biol., 2007

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.

Camille Laibe, Nicolas Le Novère

BMC Syst. Biol., 2007

SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML).

Nicolas Rodriguez, Marco Donizelli, Nicolas Le Novère

BMC Bioinform., 2007

2006

DARPP-32 Is a Robust Integrator of Dopamine and Glutamate Signals.

Éric Fernandez, Renaud Schiappa, Jean-Antoine Girault, Nicolas Le Novère

PLoS Comput. Biol., 2006

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka

Nucleic Acids Res., 2006

LGICdb: a manually curated sequence database after the genomes.

Marco Donizelli, Marie-Ange Djite, Nicolas Le Novère

Nucleic Acids Res., 2006

CellML2SBML: conversion of CellML into SBML.

Maria J. Schilstra, Lu Li, Joanne Matthews, Andrew Finney, Michael Hucka, Nicolas Le Novère

Bioinform., 2006

2004

The Molecular Pages of the mesotelencephalic dopamine consortium (DopaNet).

Nicolas Le Novère, Marco Donizelli

BMC Bioinform., 2004

2003

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang

Bioinform., 2003

2001

LGICdb: the ligand-gated ion channel database.

Nicolas Le Novère, Jean-Pierre Changeux

Nucleic Acids Res., 2001

STOCHSIM: modelling of stochastic biomolecular processes.

Nicolas Le Novère, Thomas Simon Shimizu

Bioinform., 2001

MELTING, computing the melting temperature of nucleic acid duplex.

Nicolas Le Novère

Bioinform., 2001

1999

The Ligand Gated Ion Channel Database.

Nicolas Le Novère, Jean-Pierre Changeux

Nucleic Acids Res., 1999