Nico Scherf

According to our database, Nico Scherf authored at least 24 papers between 2006 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser.

Johannes Waschke, Mario Hlawitschka, Kerim Anlas, Vikas Trivedi, Ingo Roeder, Jan Huisken, Nico Scherf

PLoS Comput. Biol., 2021

Quality control for more reliable integration of deep learning-based image segmentation into medical workflows.

Elena Williams, Sebastian Niehaus, Janis Reinelt, Alberto Merola, Paul Glad Mihai, Ingo Roeder, Nico Scherf, Maria del C. Valdés Hernández

CoRR, 2021

2020

A comparative study of semi- and self-supervised semantic segmentation of biomedical microscopy data.

Nastassya Horlava, Alisa Mironenko, Sebastian Niehaus, Sebastian Wagner, Ingo Roeder, Nico Scherf

CoRR, 2020

On the Ontological Foundations of Cellular Development.

Patryk Burek, Heinrich Herre, Nico Scherf

Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020), 2020

On the Formal Representation and Annotation of Cellular Genealogies.

Patryk Burek, Nico Scherf, Heinrich Herre

Proceedings of the Knowledge Engineering and Knowledge Management, 2020

2019

Convolutional neural network stacking for medical image segmentation in CT scans.

Marie Kloenne, Sebastian Niehaus, Leonie Lampe, Alberto Merola, Janis Reinelt, Nico Scherf

CoRR, 2019

Ontology patterns for the representation of quality changes of cells in time.

Patryk Burek, Nico Scherf, Heinrich Herre

J. Biomed. Semant., 2019

A pattern-based approach to a cell tracking ontology.

Patryk Burek, Nico Scherf, Heinrich Herre

Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 23rd International Conference KES-2019, 2019

Foundations of the Cell Tracking Ontology.

Patryk Burek, Nico Scherf, Heinrich Herre

Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

2018

Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology.

Markus Morawski, Evgeniya Kirilina, Nico Scherf, Carsten Jäger, Katja Reimann, Robert Trampel, Filippos Gavriilidis, Stefan Geyer, Bernd Biedermann, Thomas Arendt, Nikolaus Weiskopf

NeuroImage, 2018

Combining Deep Learning and Active Contours Opens The Way to Robust, Automated Analysis of Brain Cytoarchitectonics.

Konstantin Thierbach, Pierre-Louis Bazin, Walter de Back, Filippos Gavriilidis, Evgeniya Kirilina, Carsten Jäger, Markus Morawski, Stefan Geyer, Nikolaus Weiskopf, Nico Scherf

Proceedings of the Machine Learning in Medical Imaging - 9th International Workshop, 2018

2017

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection.

Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger

Int. J. Comput. Vis., 2017

2016

Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm.

Konstantin Thierbach, Gopi Shah, Ingmar Glauche, Jan Huisken, Ingo Roeder, Nico Scherf

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015

Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions.

Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch

Bioinform., 2015

2014

The benchmark data SET CeTReS.B-MI for in vitro mitosis detection.

Tim Becker, W. Kanje, Daniel H. Rapoport, Konstantin Thierbach, Nico Scherf, Ingo Roeder, Amir Madany Mamlouk

Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013

Panta Rhei: analysing the patterns of cellular organisation from time-lapse microscopy data.

Nico Scherf

PhD thesis, 2013

Beyond genealogies: Mutual information of causal paths to analyse single cell tracking data.

Nico Scherf, Thomas Zerjatke, K. Klemm, Ingmar Glauche, Ingo Roeder

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking.

Nico Scherf, Michael Kunze, Konstantin Thierbach, Thomas Zerjatke, Patryk Burek, Heinrich Herre, Ingmar Glauche, Ingo Roeder

Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013

2012

Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions.

Nico Scherf, Maria Herberg, Konstantin Thierbach, Thomas Zerjatke, Tuzer Kalkan, Peter Humphreys, Austin Smith, Ingmar Glauche, Ingo Roeder

Bioinform., 2012

FluidTracks - Combining Nonlinear Image Registration and Active Contours for Cell Tracking.

Nico Scherf, Christian Ludborzs, Konstantin Thierbach, Jens-Peer Kuska, Ulf-Dietrich Braumann, Patrick Scheibe, Tilo Pompe, Ingmar Glauche, Ingo Roeder

Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012

2009

Spatio-temporal Analysis of Unstained Cells In-vitro.

Nico Scherf, Jens-Peer Kuska, Ulf-Dietrich Braumann, Katja Franke, Tilo Pompe, Ingo Röder

Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

2008

Segmentation of Axonal Fibres in Tissue Slices.

Nico Scherf, Jens-Peer Kuska, Claudia Heine, Ulf-Dietrich Braumann, Heike Franke

Proceedings of the Bildverarbeitung für die Medizin 2008, 2008

2006

Image Registration of Differently Stained Histological Sections.

Jens-Peer Kuska, Ulf-Dietrich Braumann, Nico Scherf, Markus Löffler, Jens Einenkel, Michael Höckel, Lars-Christian Horn, Nicolas Wentzensen, Magnus von Knebel Doeberitz

Proceedings of the International Conference on Image Processing, 2006

Registration of Histologic Colour Images of Different Staining.

Ulf-Dietrich Braumann, Jens Einenkel, Lars-Christian Horn, Jens-Peer Kuska, Markus Löffler, Nico Scherf, Nicolas Wentzensen

Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006