Neil R. Clark

According to our database, Neil R. Clark authored at least 12 papers between 2011 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Cell-specific prediction and application of drug-induced gene expression .

Rachel Hodos, Ping Zhang, Hao-Chih Lee, Qiaonan Duan, Zichen Wang, Neil R. Clark, Avi Ma'ayan, Fei Wang, Brian A. Kidd, Jianying Hu, David A. Sontag, Joel Dudley

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2016

Large Collection of Diverse Gene Set Search Queries Recapitulate Known Protein-Protein Interactions and Gene-Gene Functional Associations.

Avi Ma'ayan, Neil R. Clark

CoRR, 2016

Drug-induced adverse events prediction with the LINCS L1000 data.

Zichen Wang, Neil R. Clark, Avi Ma'ayan

Bioinform., 2016

2015

Dynamics of the discovery process of protein-protein interactions from low content studies.

Zichen Wang, Neil R. Clark, Avi Ma'ayan

BMC Syst. Biol., 2015

Principle Angle Enrichment Analysis (PAEA): Dimensionally reduced multivariate gene set enrichment analysis tool.

Neil R. Clark, Maciej Szymkiewicz, Zichen Wang, Caroline D. Monteiro, Matthew R. Jones, Avi Ma'ayan

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

The characteristic direction: a geometrical approach to identify differentially expressed genes.

Neil R. Clark, Kevin S. Hu, Axel S. Feldmann, Yan Kou, Edward Y. Chen, Qiaonan Duan, Avi Ma'ayan

BMC Bioinform., 2014

2013

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.

Edward Y. Chen, Christopher M. Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Gabriela Vaz Meirelles, Neil R. Clark, Avi Ma'ayan

BMC Bioinform., 2013

Network2Canvas: network visualization on a canvas with enrichment analysis.

Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan

Bioinform., 2013

ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome.

Yan Kou, Edward Y. Chen, Neil R. Clark, Qiaonan Duan, Christopher M. Tan, Avi Ma'ayan

Proceedings of the Availability, Reliability, and Security in Information Systems and HCI, 2013

2012

Sets2Networks: network inference from repeated observations of sets.

Neil R. Clark, Ruth Dannenfelser, Christopher M. Tan, Michael E. Komosinski, Avi Ma'ayan

BMC Syst. Biol., 2012

Genes2FANs: connecting genes through functional association networks.

Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan

BMC Bioinform., 2012

2011

Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes.

Amin R. Mazloom, Ruth Dannenfelser, Neil R. Clark, Arsen V. Grigoryan, Kathryn M. Linder, Timothy Cardozo, Julia C. Bond, Aislyn D. W. Boran, Ravi Iyengar, Anna Malovannaya, Rainer B. Lanz, Avi Ma'ayan

PLoS Comput. Biol., 2011