Nathan Salomonis

According to our database, Nathan Salomonis authored at least 18 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells.

Kyle Ferchen, Nathan Salomonis, H. Leighton Grimes

Bioinform., May, 2023

2022

CellDrift: inferring perturbation responses in temporally sampled single-cell data.

Kang Jin, Daniel J. Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda Szczesniak, Bruce J. Aronow

Briefings Bioinform., 2022

2021

Pseudocell Tracer - A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination.

Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A. Khan

PLoS Comput. Biol., 2021

DeepImmuno: deep learning-empowered prediction and generation of immunogenic peptides for T-cell immunity.

Guangyuan Li, Balaji Iyer, V. B. Surya Prasath, Yizhao Ni, Nathan Salomonis

Briefings Bioinform., 2021

2020

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF.

Meenakshi Venkatasubramanian, Kashish Chetal, Daniel J. Schnell, Gowtham Atluri, Nathan Salomonis

Bioinform., 2020

2016

Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.

Andre Olsson, Meenakshi Venkatasubramanian, Viren K. Chaudhri, Bruce J. Aronow, Nathan Salomonis, Harinder Singh, H. Leighton Grimes

Nat., 2016

2014

Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson's Leukocytes Identified by RNA Sequencing.

Lilach Soreq, Alessandro Guffanti, Nathan Salomonis, Alon Simchovitz, Zvi Israel, Hagai Bergman, Hermona Soreq

PLoS Comput. Biol., 2014

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data.

Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Jennifer C. Stowe, Gabriel G. Haddad, Andrew D. McCulloch, Ilkay Altintas, Alexander C. Zambon

BMC Bioinform., 2014

2013

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.

Inna Dubchak, Matthew Munoz, Alexander Poliakov, Nathan Salomonis, Simon Minovitsky, Rolf Bodmer, Alexander C. Zambon

Bioinform., 2013

2012

Mosaic: making biological sense of complex networks.

Chao Zhang, Kristina Hanspers, Allan Kuchinsky, Nathan Salomonis, Dong Xu, Alexander R. Pico

Bioinform., 2012

GO-Elite: a flexible solution for pathway and ontology over-representation.

Alexander C. Zambon, Stan Gaj, Isaac Ho, Kristina Hanspers, Karen Vranizan, Chris T. A. Evelo, Bruce R. Conklin, Alexander R. Pico, Nathan Salomonis

Bioinform., 2012

LineageProfiler: Automated Classification and Visualization of Cell Type Identity for Mammalian Transcriptomes.

Nathan Salomonis

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

AltAnalyze - An Optimized Platform for RNA-Seq Splicing and Domain-Level Analyses.

Nathan Salomonis

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data.

Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

2010

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.

Dorothea Emig, Nathan Salomonis, Jan Baumbach, Thomas Lengauer, Bruce R. Conklin, Mario Albrecht

Nucleic Acids Res., 2010

2009

Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors.

Nathan Salomonis, Brandon Nelson, Karen Vranizan, Alexander R. Pico, Kristina Hanspers, Allan Kuchinsky, Linda Ta, Mark Mercola, Bruce R. Conklin

PLoS Comput. Biol., 2009

2007

GenMAPP 2: new features and resources for pathway analysis.

Nathan Salomonis, Kristina Hanspers, Alexander C. Zambon, Karen Vranizan, Steven C. Lawlor, Kam D. Dahlquist, Scott Doniger, Joshua M. Stuart, Bruce R. Conklin, Alexander R. Pico

BMC Bioinform., 2007

2005

ANOSVA: a statistical method for detecting splice variation from expression data.

Melissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005