Natasa Przulj

CoRR, 2024

Graphlets correct for the topological information missed by random walks.

[BibT_eX]

[DOI]

Sam F. L. Windels

CoRR, 2024

Simplicity within biological complexity.

[BibT_eX]

[DOI]

CoRR, 2024

2023

A functional analysis of omic network embedding spaces reveals key altered functions in cancer.

[BibT_eX]

[DOI]

Sergio Doria-Belenguer

Bioinform., May, 2023

2022

Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem.

[BibT_eX]

[DOI]

J. Glob. Optim., 2022

Identifying cellular cancer mechanisms through pathway-driven data integration.

[BibT_eX]

[DOI]

Sam F. L. Windels

Bioinform., 2022

2021

Linear functional organization of the omic embedding space.

[BibT_eX]

[DOI]

Bioinform., 2021

Multi-project and Multi-profile joint Non-negative Matrix Factorization for cancer omic datasets.

[BibT_eX]

[DOI]

Diego Azael Salazar

Carlos F. Valencia

Bioinform., 2021

Classification in biological networks with hypergraphlet kernels.

[BibT_eX]

[DOI]

Bioinform., 2021

2020

Chromatin network markers of leukemia.

[BibT_eX]

[DOI]

Bioinform., 2020

2019

Graphlet Laplacians for topology-function and topology-disease relationships.

[BibT_eX]

[DOI]

Sam F. L. Windels

Bioinform., 2019

Functional geometry of protein interactomes.

[BibT_eX]

[DOI]

Bioinform., 2019

2018

Higher-order molecular organization as a source of biological function.

[BibT_eX]

[DOI]

Thomas Gaudelet

Bioinform., 2018

2017

Omics Data Complementarity Underlines Functional Cross-Communication in Yeast.

[BibT_eX]

[DOI]

J. Integr. Bioinform., 2017

Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods.

[BibT_eX]

[DOI]

Bioinform., 2017

2016

Predictive Functional Connectivity of Real-World Systems.

[BibT_eX]

[DOI]

CoRR, 2016

Fuse: multiple network alignment via data fusion.

[BibT_eX]

[DOI]

Vladimir Gligorijevic

Bioinform., 2016

Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment.

[BibT_eX]

[DOI]

Vladimir Gligorijevic

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2015

Proper evaluation of alignment-free network comparison methods.

[BibT_eX]

[DOI]

Ömer Nebil Yaveroglu

Bioinform., 2015

L-GRAAL: Lagrangian graphlet-based network aligner.

[BibT_eX]

[DOI]

Bioinform., 2015

Topology-function conservation in protein-protein interaction networks.

[BibT_eX]

[DOI]

Darren Davis

Ömer Nebil Yaveroglu

Aleksandar Stojmirovic

Bioinform., 2015

2014

The Topology of the Growing Human Interactome Data.

[BibT_eX]

[DOI]

Vuk Janjic

J. Integr. Bioinform., 2014

ergm.graphlets: A Package for ERG Modeling Based on Graphlet Statistics.

[BibT_eX]

[DOI]

CoRR, 2014

Predicting disease associations via biological network analysis.

[BibT_eX]

[DOI]

BMC Bioinform., 2014

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.

[BibT_eX]

[DOI]

Bioinform., 2014

Integration of molecular network data reconstructs Gene Ontology.

[BibT_eX]

[DOI]

Vladimir Gligorijevic

Vuk Janjic

Bioinform., 2014

2013

Graphlet-based measures are suitable for biological network comparison.

[BibT_eX]

[DOI]

Wayne B. Hayes

Kai Sun

Bioinform., 2013

2011

Introduction to the Special Issue on Biological Networks.

[BibT_eX]

[DOI]

Internet Math., 2011

GraphCruch 2: Software tool for network modeling, alignment and clustering.

[BibT_eX]

[DOI]

Aleksandar Stevanovic

Wayne B. Hayes

BMC Bioinform., 2011

Integrative network alignment reveals large regions of global network similarity in yeast and human.

[BibT_eX]

[DOI]

Bioinform., 2011

A framework for FPGA acceleration of large graph problems: Graphlet counting case study.

[BibT_eX]

[DOI]

Proceedings of the 2011 International Conference on Field-Programmable Technology, 2011

2010

Complementarity of network and sequence information in homologous proteins.

[BibT_eX]

[DOI]

Vesna Memisevic

J. Integr. Bioinform., 2010

An integrative approach to modeling biological networks.

[BibT_eX]

[DOI]

Vesna Memisevic

J. Integr. Bioinform., 2010

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2010

Geometric Evolutionary Dynamics of Protein Interaction Networks.

[BibT_eX]

[DOI]

Aleksandar Stevanovic

Wayne B. Hayes

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

From Topology to Phenotype in Protein-Protein Interaction Networks.

[BibT_eX]

[DOI]

Proceedings of the Network Science - Complexity in Nature and Technology., 2010

2009

Geometric De-noising of Protein-Protein Interaction Networks.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2009

Learning the Structure of Protein-Protein Interaction Networks.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

GraphCrunch: A tool for large network analyses.

[BibT_eX]

[DOI]

Jason Lai

BMC Bioinform., 2008

Fitting a geometric graph to a protein-protein interaction network.

[BibT_eX]

[DOI]

Desmond J. Higham

Marija Rasajski

Bioinform., 2008

2007

Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution.

[BibT_eX]

[DOI]

Fereydoun Hormozdiari

Petra Berenbrink

Süleyman Cenk Sahinalp

PLoS Comput. Biol., 2007

Biological network comparison using graphlet degree distribution.

[BibT_eX]

[DOI]

Bioinform., 2007

2006

Efficient estimation of graphlet frequency distributions in protein-protein interaction networks.

[BibT_eX]

[DOI]

Bioinform., 2006

Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation.

[BibT_eX]

[DOI]

Fereydoun Hormozdiari

Petra Berenbrink

Süleyman Cenk Sahinalp

Proceedings of the Systems Biology and Computational Proteomics, 2006

2005

Analyzing large biological networks: protein-protein interactions example.

[BibT_eX]

[DOI]

PhD thesis, 2005

2-Tree probe interval graphs have a large obstruction set.

[BibT_eX]

[DOI]

Discret. Appl. Math., 2005

2004

Hereditary dominating pair graphs.

[BibT_eX]

[DOI]

Ekkehard Köhler

Discret. Appl. Math., 2004

Functional topology in a network of protein interactions.

[BibT_eX]

[DOI]

Dennis A. Wigle

Bioinform., 2004

Modeling interactome: scale-free or geometric?.

[BibT_eX]

[DOI]

Bioinform., 2004

Protein complex prediction via cost-based clustering.

[BibT_eX]

[DOI]

Andrew D. King

Bioinform., 2004

1998

Minimum Average Time Broadcast Graphs.

[BibT_eX]

[DOI]

Arthur L. Liestman