Natarajan Kannan

According to our database, Natarajan Kannan authored at least 16 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions.

Zhongliang Zhou, Wayland Yeung, Nathan Gravel, Mariah Salcedo, Saber Soleymani, Sheng Li, Natarajan Kannan

Bioinform., February, 2023

Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies.

Wayland Yeung, Zhongliang Zhou, Liju Mathew, Nathan Gravel, Rahil Taujale, Brady O'boyle, Mariah Salcedo, Aarya Venkat, William Lanzilotta, Sheng Li, Natarajan Kannan

Briefings Bioinform., January, 2023

Alignment-free estimation of sequence conservation for identifying functional sites using protein sequence embeddings.

Wayland Yeung, Zhongliang Zhou, Sheng Li, Natarajan Kannan

Briefings Bioinform., January, 2023

XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications.

Zhongliang Zhou, Mengxuan Hu, Mariah Salcedo, Nathan Gravel, Wayland Yeung, Aarya Venkat, Dongliang Guo, Jielu Zhang, Natarajan Kannan, Sheng Li

CoRR, 2023

2022

PDBe-KB: collaboratively defining the biological context of structural data.

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2022

2021

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases.

Liang-Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan

BMC Bioinform., 2021

2020

PDBe-KB: a community-driven resource for structural and functional annotations.

Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2020

Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction.

Liang-Chin Huang, Wayland Yeung, Ye Wang, Huimin Cheng, Aarya Venkat, Sheng Li, Ping Ma, Khaled Rasheed, Natarajan Kannan

BMC Bioinform., 2020

2017

Classifying kinase conformations using a machine learning approach.

Daniel Ian McSkimming, Khaled Rasheed, Natarajan Kannan

BMC Bioinform., 2017

2016

Unsupervised feature based key-frame extraction towards face recognition.

Jana Selvaganesan, Kannan Natarajan

Int. Arab J. Inf. Technol., 2016

2015

SPARQLing: A Graphical Interface for SPARQL.

Shima Dastgheib, Daniel Ian McSkimming, Kannan Natarajan, Krys J. Kochut

Proceedings of the ISWC 2015 Posters & Demonstrations Track co-located with the 14th International Semantic Web Conference (ISWC-2015), 2015

Creating Biomedical Ontologies Using mOntage.

Shima Dastgheib, Daniel Ian McSkimming, Natarajan Kannan, Krys J. Kochut

Proceedings of the Data Integration in the Life Sciences - 11th International Conference, 2015

2014

Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers.

Man Chon U, Eric Talevich, Samiksha Katiyar, Khaled Rasheed, Natarajan Kannan

PLoS Comput. Biol., 2014

2011

ProKinO: A Framework for Protein Kinase Ontology.

Gurinder Pal Singh Gosal, Natarajan Kannan, Krys J. Kochut

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2006

Live URLs: breathing life into URLs.

Natarajan Kannan, Toufeeq Hussain

Proceedings of the 15th international conference on World Wide Web, 2006

2002

Dead-Block Elimination in Cache: A Mechanism to Reduce I-cache Power Consumption in High Performance Microprocessors.

Mohan G. Kabadi, Natarajan Kannan, Palanidaran Chidambaram, Suriya Narayanan, M. Subramanian, Ranjani Parthasarathi

Proceedings of the High Performance Computing, 2002