Naotake Ogasawara

According to our database, Naotake Ogasawara authored at least 12 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

A critical role of the periplasm in copper homeostasis in Gram-negative bacteria.

Jun-ichi Ishihara, Tomohiro Mekubo, Chikako Kusaka, Suguru Kondo, Ryotaro Oiko, Kensuke Igarashi, Hirofumi Aiba, Shu Ishikawa, Naotake Ogasawara, Taku Oshima, Hiroki Takahashi

Biosyst., September, 2023

2011

Genome-wide binding profiles of the <i>Bacillus subtilis</i> transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.

Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa

Nucleic Acids Res., 2011

AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS.

Hiroki Takahashi, Takuya Morimoto, Naotake Ogasawara, Shigehiko Kanaya

BMC Bioinform., 2011

2009

A Constrained Gaussian Mixture Model for Correlation-Based Cluster Analysis of Gene Expression Data.

Naoto Yukinawa, Taku Yoshioka, Kazuo Kobayashi, Naotake Ogasawara, Shin Ishii

Inf. Media Technol., 2009

2007

Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships.

Hijiri Maeno, Md. Altaf-Ul-Amin, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya

Inf. Media Technol., 2007

Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model.

Ryoko Morioka, Shigehiko Kanaya, Masami Y. Hirai, Mitsuru Yano, Naotake Ogasawara, Kazuki Saito

BMC Bioinform., 2007

2005

Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis.

Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai

Proceedings of the Biocomputing 2005, 2005

2004

BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics.

Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, Kenta Nakai

Nucleic Acids Res., 2004

Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information.

Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano

Proceedings of the Biocomputing 2004, 2004

Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data.

Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations.

Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002

Clustering of Gene Expression Data by Mixture of PCA Models.

Taku Yoshioka, Ryouko Morioka, Kazuo Kobayashi, Shigeyuki Oba, Naotake Ogasawara, Shin Ishii

Proceedings of the Artificial Neural Networks, 2002