Naftali Kaminski

According to our database, Naftali Kaminski authored at least 17 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.

Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan

BMC Bioinform., December, 2023

iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.

Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan

BMC Bioinform., December, 2023

Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES.

Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski, Laura E. Niklason, Yuval Kluger

Bioinform., January, 2023

A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.

Wenxuan Deng, Bolun Li, Jiawei Wang, Wei Jiang, Xiting Yan, Ningshan Li, Milica Vukmirovic, Naftali Kaminski, Jing Wang, Hongyu Zhao

Briefings Bioinform., January, 2023

2022

CINS: Cell Interaction Network inference from Single cell expression data.

Ye Yuan, Carlos Cosme, Taylor Sterling Adams, Jonas Schupp, Koji Sakamoto, Nikos Xylourgidis, Matthew Ruffalo, Jiachen Li, Naftali Kaminski, Ziv Bar-Joseph

PLoS Comput. Biol., September, 2022

2021

A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data.

Hongyu Li, Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Hongyu Zhao

BMC Bioinform., 2021

2018

iDREM: Interactive visualization of dynamic regulatory networks.

Jun Ding, James S. Hagood, Namasivayam Ambalavanan, Naftali Kaminski, Ziv Bar-Joseph

PLoS Comput. Biol., 2018

2015

T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes.

Grace T. Huang, Ioannis Tsamardinos, Vineet K. Raghu, Naftali Kaminski, Panayiotis V. Benos

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

Bidirectional elastic image registration using B-spline affine transformation.

Suicheng Gu, Xin Meng, Frank C. Sciurba, Hongxia Ma, Joseph K. Leader, Naftali Kaminski, David Gur, Jiantao Pu

Comput. Medical Imaging Graph., 2014

Missing value imputation in high-dimensional phenomic data: imputable or not, and how?

Serena G. Liao, Yan Lin, Dongwan D. Kang, Divay Chandra, Jessica Bon, Naftali Kaminski, Frank C. Sciurba, George C. Tseng

BMC Bioinform., 2014

2012

Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density.

Claudia Coronnello, Ryan J. Hartmaier, Arshi Arora, Luai Huleihel, Kusum V. Pandit, Abha S. Bais, Michael Butterworth, Naftali Kaminski, Gary D. Stormo, Steffi Oesterreich, Panayiotis V. Benos

PLoS Comput. Biol., 2012

An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection.

Xingbin Wang, Dongwan D. Kang, Kui Shen, Chi Song, Shuya Lu, Lun-Ching Chang, Serena G. Liao, Zhiguang Huo, Shaowu Tang, Ying Ding, Naftali Kaminski, Etienne Sibille, Yan Lin, Jia Li, George C. Tseng

Bioinform., 2012

2010

Module-based prediction approach for robust inter-study predictions in microarray data.

Zhibao Mi, Kui Shen, Nan Song, Chunrong Cheng, Chi Song, Naftali Kaminski, George C. Tseng

Bioinform., 2010

2008

Alignment and classification of time series gene expression in clinical studies.

Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies.

Naftali Kaminski, Ziv Bar-Joseph

J. Comput. Biol., 2007

2005

Comparison of normalization methods for CodeLink Bioarray data.

Wei Wu, Nilesh Dave, George C. Tseng, Thomas Richards, Eric P. Xing, Naftali Kaminski

BMC Bioinform., 2005

2004

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays.

Yoseph Barash, Elinor Dehan, Meir Krupsky, Wilbur Franklin, Marc Geraci, Nir Friedman, Naftali Kaminski

Bioinform., 2004