Mukul S. Bansal
Orcid: 0000-0003-0039-2596
According to our database1,
Mukul S. Bansal
authored at least 56 papers
between 2005 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
On csauthors.net:
Bibliography
2024
Proceedings of the Comparative Genomics - 21st International Conference, 2024
2023
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
J. Comput. Biol., April, 2023
Bioinform., February, 2023
Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial Genes and Domains.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2.
J. Comput. Biol., 2023
Reducing the Impact of Domain Rearrangement on Sequence Alignment and Phylogeny Reconstruction.
Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023
2022
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Proceedings of the Comparative Genomics - 19th International Conference, 2022
2021
Improved Duplication-Transfer-Loss Reconciliation with Extinct and Unsampled Lineages.
Algorithms, 2021
TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference.
Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021
Optimal Completion and Comparison of Incomplete Phylogenetic Trees Under Robinson-Foulds Distance.
Proceedings of the 32nd Annual Symposium on Combinatorial Pattern Matching, 2021
2020
Linear-time algorithms for phylogenetic tree completion under Robinson-Foulds distance.
Algorithms Mol. Biol., 2020
TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
A Supervised Machine Learning Approach for Distinguishing Between Additive and Replacing Horizontal Gene Transfers.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
Proceedings of the Algorithms for Computational Biology, 2020
2019
Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
SaGePhy: an improved phylogenetic simulation framework for gene and subgene evolution.
Bioinform., 2019
Simultaneous Multi-Domain-Multi-Gene Reconciliation Under the Domain-Gene-Species Reconciliation Model.
Proceedings of the Bioinformatics Research and Applications - 15th International Symposium, 2019
On Inferring Additive and Replacing Horizontal Gene Transfers Through Phylogenetic Reconciliation.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
BMC Bioinform., 2018
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss.
Bioinform., 2018
Linear-Time Algorithms for Some Phylogenetic Tree Completion Problems Under Robinson-Foulds Distance.
Proceedings of the Comparative Genomics - 16th International Conference, 2018
An Integer Linear Programming Solution for the Domain-Gene-Species Reconciliation Problem.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Assessing the Impact of Uncertain Gene Tree Rooting on Phylogenetic Reconciliation Using a Simulation Framework.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Phylogenetic uncertainty and transmission network inference: Lessons from phylogenetic reconciliation.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016
2015
Bioinform., 2015
2014
2013
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss.
J. Comput. Biol., 2013
Bioinform., 2013
2012
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
Bioinform., 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
2010
BMC Bioinform., 2010
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.
BMC Bioinform., 2010
Proceedings of the Comparative Genomics - International Workshop, 2010
Proceedings of the 9th ACM SIGPLAN-SIGSOFT Workshop on Program Analysis for Software Tools and Engineering, 2010
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
2009
The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI-Based Local Searches.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants.
J. Comput. Biol., 2009
Proceedings of the Bioinformatics and Computational Biology, 2009
2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
Bioinform., 2008
Proceedings of the Research in Computational Molecular Biology, 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches.
Proceedings of the Bioinformatics Research and Applications, 2008
2007
An <i>Omega</i>(<i>n</i><sup>2</sup>/log <i>n</i>) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007
Heuristics for the Gene-Duplication Problem: A <i>Theta</i> ( <i>n</i> ) Speed-Up for the Local Search.
Proceedings of the Research in Computational Molecular Biology, 2007
2005