Morris A. Swertz

According to our database, Morris A. Swertz authored at least 50 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.

Xiaofeng Liao, Thomas H. A. Ederveen, Anna Niehues, Casper de Visser, Junda Huang, Firdaws Badmus, Cenna Doornbos, Yuliia Orlova, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen

J. Biomed. Semant., December, 2024

Visualization and exploration of linked data using virtual reality.

Alexander Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Rebecca C. Wilson, Esther van Enckevort, Morris A. Swertz

Database J. Biol. Databases Curation, January, 2024

Genome-wide Studies Reveal Genetic Risk Factors for Hepatic Fat Content.

Yanni Li, Eline H. van den Berg, Alexander Kurilshikov, Dasha V. Zhernakova, Ranko Gacesa, Shixian Hu, Esteban A. Lopera-Maya, Alexandra Zhernakova, Raúl Aguirre-Gamboa, Patrick Deelen, Lude Franke, Jan A. Kuivenhoven, Ilja M. Nolte, Serena Sanna, Harold Snieder, Morris A. Swertz, Peter M. Visscher, Judith M. Vonk, Cisca Wijmenga, Vincent E. de Meijer, Robin P. F. Dullaart, Hans Blokzijl, Eleonora A. M. Festen, Jingyuan Fu, Rinse K. Weersma

Genom. Proteom. Bioinform., 2024

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.

Xiaofeng Liao, Yuliia Orlova, Cenna Doornbos, Anna Niehues, Casper de Visser, Junda Huang, Thomas H. A. Ederveen, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

Comparing Sequence-Based and Literature-Based Pathogenicity Scoring Methods for Human Variants.

Luc Mottin, Nona Naderi, Anaïs Mottaz, Pierre-André Michel, Lennart F. Johansson, Morris A. Swertz, Andrew Stubbs, Emilie Pasche, Julien Gobeill, Patrick Ruch

Proceedings of the Digital Health and Informatics Innovations for Sustainable Health Care Systems, 2024

2023

A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR.

Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis

Data Sci. J., January, 2023

Ten quick tips for building FAIR workflows.

Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues

PLoS Comput. Biol., 2023

Semi-automatic translation of medicine usage data (in Dutch, free-text) from Lifelines COVID-19 questionnaires to ATC codes.

Alexander Kellmann, Pauline Lanting, Lude Franke, David van Enckevort, Morris A. Swertz

Database J. Biol. Databases Curation, 2023

Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of Graph2VR.

Alexander Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Becca Wilson, Esther van Enckevort, Morris A. Swertz

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Surveyed common data access policies preferences amongst European Reference Networks.

Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.

Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos

J. Biomed. Semant., 2022

2020

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research.

David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García Castro, Dietlind Gerloff, Ivo Glynne Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud

F1000Research, 2020

Deconvolution of bulk blood eQTL effects into immune cell subpopulations.

Raúl Aguirre-Gamboa, Niek de Klein, Jennifer di Tommaso, Annique Claringbould, Monique G. P. van der Wijst, Dylan de Vries, Harm Brugge, Roy Oelen, Urmo Võsa, Maria M. Zorro, Xiaojin Chu, Olivier B. Bakker, Zuzanna Borek, Isis Ricaño-Ponce, Patrick Deelen, Cheng-Jiang Xu, Morris A. Swertz, Iris Jonkers, Sebo Withoff, Irma Joosten, Serena Sanna, Vinod Kumar, Hans J. P. M. Koenen, Leo A. B. Joosten, Mihai G. Netea, Cisca Wijmenga, Lude Franke, Yang Li

BMC Bioinform., 2020

2019

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.

K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D. L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz

Bioinform., 2019

MOLGENIS Catalogue - towards a Unified Application for Data and Sample Catalogues.

Alexander Kellmann, David van Enckevort, Marije van der Geest, Aneas Hodselmans, Morris A. Swertz

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

2018

NIPTeR: an R package for fast and accurate trisomy prediction in non-invasive prenatal testing.

Lennart F. Johansson, Hendrik A. de Weerd, Eddy N. de Boer, Freerk van Dijk, Gerard J. te Meerman, Rolf Sijmons, Birgit Sikkema-Raddatz, Morris A. Swertz

BMC Bioinform., 2018

Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation.

Shuang Li, K. Joeri van der Velde, Morris A. Swertz

Proceedings of the 14th IEEE International Conference on e-Science, 2018

2017

Interoperability and FAIRness through a novel combination of Web technologies.

Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand K. Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier

PeerJ Prepr., 2017

BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration.

Chao Pang, Fleur D. L. Kelpin, David van Enckevort, Niina Eklund, Kaisa Silander, Dennis Hendriksen, Mark de Haan, Jonathan Jetten, Tommy de Boer, Bart Charbon, Petr Holub, Hans L. Hillege, Morris A. Swertz

Bioinform., 2017

2016

Interoperability and FAIRness through a novel combination of Web technologies.

Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier

PeerJ Prepr., 2016

MOLGENIS/connect: a system for semi-automatic integration of heterogeneous phenotype data with applications in biobanks.

Chao Pang, David van Enckevort, Mark de Haan, Fleur D. L. Kelpin, Jonathan Jetten, Dennis Hendriksen, Tommy de Boer, Bart Charbon, Erwin Winder, K. Joeri van der Velde, Dany Doiron, Isabel Fortier, Hans L. Hillege, Morris A. Swertz

Bioinform., 2016

Target and (Astro-)WISE technologies Data federations and its applications.

Edwin Valentijn, K. G. Begeman, Andrey N. Belikov, Danny Boxhoorn, Jarle Brinchmann, John McFarland, H. Holties, K. H. Kuijken, Gijs A. Verdoes Kleijn, Willem-Jan Vriend, O. Rees Williams, Jos B. T. M. Roerdink, Lambert R. B. Schomaker, Morris A. Swertz, A. Tsyganov, G. J. W. van Dijk

Proceedings of the Astroinformatics 2016, Sorrento, Italy, October 19-25, 2016, 2016

2015

State-of-the-Art and Future Challenges in the Integration of Biobank Catalogues.

Heimo Müller, Robert Reihs, Kurt Zatloukal, Fleur Jeanquartier, Roxana Merino-Martinez, David van Enckevort, Morris A. Swertz, Andreas Holzinger

Proceedings of the Smart Health - Open Problems and Future Challenges, 2015

PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols.

Alexandros Kanterakis, Joël Kuiper, George Potamias, Morris A. Swertz

Source Code Biol. Medicine, 2015

MOLGENIS/OMX for multi-omics and personalized medicine.

Morris A. Swertz, K. Joeri van der Velde

J. Clin. Bioinform., 2015

MOLGENIS catalogue.

Morris A. Swertz, David van Enckevort, Chao Pang

J. Clin. Bioinform., 2015

BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing.

Chao Pang, Dennis Hendriksen, Martijn Dijkstra, K. Joeri van der Velde, Joël Kuiper, Hans L. Hillege, Morris A. Swertz

J. Am. Medical Informatics Assoc., 2015

SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data.

Chao Pang, Annet Sollie, Anna Sijtsma, Dennis Hendriksen, Bart Charbon, Mark de Haan, Tommy de Boer, Fleur D. L. Kelpin, Jonathan Jetten, K. Joeri van der Velde, Nynke Smidt, Rolf Sijmons, Hans L. Hillege, Morris A. Swertz

Database J. Biol. Databases Curation, 2015

2014

WormQTL^HD - a web database for linking human disease to natural variation data in <i>C. elegans</i>.

K. Joeri van der Velde, Mark de Haan, Konrad Zych, Danny Arends, L. Basten Snoek, Jan E. Kammenga, Ritsert C. Jansen, Morris A. Swertz, Yang Li

Nucleic Acids Res., 2014

Spá: A Web-Based Viewer for Text Mining in Evidence Based Medicine.

Joël Kuiper, Iain James Marshall, Byron C. Wallace, Morris A. Swertz

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2014

2013

WormQTL - public archive and analysis web portal for natural variation data in <i>Caenorhabditis</i> spp.

L. Basten Snoek, K. Joeri van der Velde, Danny Arends, Yang Li, Antje Beyer, Mark Elvin, Jasmin Fisher, Alex Hajnal, Michael O. Hengartner, Gino B. Poulin, Miriam Rodriguez, Tobias Schmid, Sabine Schrimpf, Feng Xue, Ritsert C. Jansen, Jan E. Kammenga, Morris A. Swertz

Nucleic Acids Res., 2013

Consensus and conflict cards for metabolic pathway databases.

Miranda D. Stobbe, Morris A. Swertz, Ines Thiele, Trebor Rengaw, Antoine H. C. van Kampen, Perry D. Moerland

BMC Syst. Biol., 2013

Scaling Bio-Analyses from Computational Clusters to Grids.

Heorhiy Byelas, Martijn Dijkstra, Pieter B. T. Neerincx, Freerk van Dijk, Alexandros Kanterakis, Patrick Deelen, Morris A. Swertz

Proceedings of the 5th International Workshop on Science Gateways, 2013

Visualization of Bioinformatics Workflows for Ease of Understanding and Design Activities.

Heorhiy Byelas, Morris A. Swertz

Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

2012

VarioML framework for comprehensive variation data representation and exchange.

Myles Byrne, Ivo F. A. C. Fokkema, Owen Lancaster, Tomasz Adamusiak, Anni Ahonen-Bishopp, David Atlan, Christophe Béroud, Michael Cornell, Raymond Dalgleish, Andrew Devereau, George P. Patrinos, Morris A. Swertz, Peter E. M. Taschner, Gudmundur A. Thorisson, Mauno Vihinen, Anthony J. Brookes, Juha Muilu

BMC Bioinform., 2012

xQTL workbench: a scalable web environment for multi-level QTL analysis.

Danny Arends, K. Joeri van der Velde, Pjotr Prins, Karl W. Broman, Steffen Möller, Ritsert C. Jansen, Morris A. Swertz

Bioinform., 2012

Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs.

Caroline Durrant, Morris A. Swertz, Rudi Alberts, Danny Arends, Steffen Möller, Richard Mott, Pjotr Prins, K. Joeri van der Velde, Ritsert C. Jansen, Klaus Schughart

Briefings Bioinform., 2012

Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework.

Heorhiy Byelas, Martijn Dijkstra, Morris A. Swertz

Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011

OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript.

Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen E. Parkinson, Morris A. Swertz

BMC Bioinform., 2011

ontoCAT: an R package for ontology traversal and search.

Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris A. Swertz, Misha Kapushesky

Bioinform., 2011

A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data.

Isthiaq Ahmad, Frank Suits, Berend Hoekman, Morris A. Swertz, Heorhiy Byelas, Martijn Dijkstra, Rob W. W. Hooft, Dmitry Katsubo, Bas van Breukelen, Rainer Bischoff, Peter Horvatovich

Bioinform., 2011

Towards a MOLGENIS Based Computational Framework.

Heorhiy Byelas, Alexandros Kanterakis, Morris A. Swertz

Proceedings of the 19th International Euromicro Conference on Parallel, 2011

2010

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.

Morris A. Swertz, Martijn Dijkstra, Tomasz Adamusiak, K. Joeri van der Velde, Alexandros Kanterakis, Erik T. Roos, Joris Lops, Gudmundur A. Thorisson, Danny Arends, George Byelas, Juha Muilu, Anthony J. Brookes, Engbert O. de Brock, Ritsert C. Jansen, Helen E. Parkinson

BMC Bioinform., 2010

Mouse Resource Browser - a database of mouse databases.

Michael Zouberakis, Christina Chandras, Morris A. Swertz, Damian Smedley, Michael Gruenberger, Jonathan B. L. Bard, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, Paul N. Schofield, George Kollias, Vassilis Aidinis

Database J. Biol. Databases Curation, 2010

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.

Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock

Database J. Biol. Databases Curation, 2010

2009

designGG: an R-package and web tool for the optimal design of genetical genomics experiments.

Yang Li, Morris A. Swertz, Gonzalo Vera, Jingyuan Fu, Rainer Breitling, Ritsert C. Jansen

BMC Bioinform., 2009

2008

Solutions for data integration in functional genomics: a critical assessment and case study.

Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield

Briefings Bioinform., 2008

Towards dynamic database infrastructures for mouse genetics.

Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2005

Combining microarrays and genetic analysis.

Rudi Alberts, Jingyuan Fu, Morris A. Swertz, L. Alrik Lubbers, Casper J. Albers, Ritsert C. Jansen

Briefings Bioinform., 2005

2004

Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.

Morris A. Swertz, Engbert O. de Brock, Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Richard J. S. Baerends, Jan Kok, Oscar P. Kuipers, Ritsert C. Jansen

Bioinform., 2004