Morihiro Hayashida

According to our database, Morihiro Hayashida authored at least 54 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Volume formula and growth rates of the balls of strings under the edit distances.

Hitoshi Koyano, Morihiro Hayashida

Appl. Math. Comput., December, 2023

2021

Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework.

Fuyi Li, Jinxiang Chen, Zongyuan Ge, Ya Wen, Yanwei Yue, Morihiro Hayashida, Abdelkader Baggag, Halima Bensmail, Jiangning Song

Briefings Bioinform., 2021

2020

Improving Accuracy and Speed of Network-based Intrusion Detection using Gradient Boosting Trees.

Ryosuke Terado, Morihiro Hayashida

Proceedings of the 6th International Conference on Information Systems Security and Privacy, 2020

Measuring the Similarity of Proteomes using Grammar-based Compression via Domain Combinations.

Morihiro Hayashida, Hitoshi Koyano, Jose C. Nacher

Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020), 2020

2019

Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings.

Hitoshi Koyano, Morihiro Hayashida, Tatsuya Akutsu

J. Comput. Syst. Sci., 2019

Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles.

Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher

J. Bioinform. Comput. Biol., 2019

Bastion3: a two-layer ensemble predictor of type III secreted effectors.

Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow

Bioinform., 2019

Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches.

Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow

Briefings Bioinform., 2019

Artificial Neural Network Approach to Prediction of Protein-RNA Residue-base Contacts.

Morihiro Hayashida, Jose C. Nacher, Hitoshi Koyano

Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

2018

Improving conditional random field model for prediction of protein-RNA residue-base contacts.

Morihiro Hayashida, Noriyuki Okada, Mayumi Kamada, Hitoshi Koyano

Quant. Biol., 2018

Analysis of Critical and Redundant Vertices in Controlling Directed Complex Networks Using Feedback Vertex Sets.

Yu Bao, Morihiro Hayashida, Pengyu Liu, Masayuki Ishitsuka, Jose C. Nacher, Tatsuya Akutsu

J. Comput. Biol., 2018

ncRNA-disease association prediction based on sequence information and tripartite network.

Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher

BMC Syst. Biol., 2018

Improving prediction of heterodimeric protein complexes using combination with pairwise kernel.

Peiying Ruan, Morihiro Hayashida, Tatsuya Akutsu, Jean-Philippe Vert

BMC Bioinform., 2018

Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors.

Jiawei Wang, Bingjiao Yang, André Leier, Tatiana T. Marquez-Lago, Morihiro Hayashida, Andrea Rocker, Yanju Zhang, Tatsuya Akutsu, Kuo-Chen Chou, Richard A. Strugnell, Jiangning Song, Trevor Lithgow

Bioinform., 2018

Grammar-based Compression for Directed and Undirected Generalized Series-parallel Graphs using Integer Linear Programming.

Morihiro Hayashida, Hitoshi Koyano, Tatsuya Akutsu

Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018), 2018

2016

Enumeration Method for Structural Isomers Containing User-Defined Structures Based on Breadth-First Search Approach.

Jira Jindalertudomdee, Morihiro Hayashida, Tatsuya Akutsu

J. Comput. Biol., 2016

Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order.

Jira Jindalertudomdee, Morihiro Hayashida, Yang Zhao, Tatsuya Akutsu

BMC Bioinform., 2016

LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length.

Yu Bao, Morihiro Hayashida, Tatsuya Akutsu

BMC Bioinform., 2016

Critical evaluation of <i>in silico</i> methods for prediction of coiled-coil domains in proteins.

Chen Li, Catherine Ching Han Chang, Jeremy Nagel, Benjamin T. Porebski, Morihiro Hayashida, Tatsuya Akutsu, Jiangning Song, Ashley M. Buckle

Briefings Bioinform., 2016

Finding Median and Center Strings for a Probability Distribution on a Set of Strings Under Levenshtein Distance Based on Integer Linear Programming.

Morihiro Hayashida, Hitoshi Koyano

Proceedings of the Biomedical Engineering Systems and Technologies, 2016

Integer Linear Programming Approach to Median and Center Strings for a Probability Distribution on a Set of Strings.

Morihiro Hayashida, Hitoshi Koyano

Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016

Host-Pathogen Protein Interaction Prediction Based on Local Topology Structures of a Protein Interaction Network.

Jira Jindalertudomdee, Morihiro Hayashida, Jiangning Song, Tatsuya Akutsu

Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

2015

Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs.

Yang Zhao, Morihiro Hayashida, Yue Cao, Jaewook Hwang, Tatsuya Akutsu

BMC Bioinform., 2015

2014

Domain-Based Approaches to Prediction and Analysis of Protein-Protein Interactions.

Morihiro Hayashida, Tatsuya Akutsu

Int. J. Knowl. Discov. Bioinform., 2014

Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels.

Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu

BMC Bioinform., 2014

2013

Breadth-First Search Approach to Enumeration of Tree-like Chemical Compounds.

Yang Zhao, Morihiro Hayashida, Jira Jindalertudomdee, Hiroshi Nagamochi, Tatsuya Akutsu

J. Bioinform. Comput. Biol., 2013

Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso.

Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu

BMC Syst. Biol., 2013

2012

Protein complex prediction via improved verification methods using constrained domain-domain matching.

Yang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu

Int. J. Bioinform. Res. Appl., 2012

Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks.

Tatsuya Akutsu, Yang Zhao, Morihiro Hayashida, Takeyuki Tamura

IEICE Trans. Inf. Syst., 2012

A quadsection algorithm for grammar-based image compression.

Morihiro Hayashida, Peiying Ruan, Tatsuya Akutsu

Integr. Comput. Aided Eng., 2012

Finding Conserved Regions in Protein Structures Using Support Vector Machines and Structure Alignment.

Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura

Proceedings of the Pattern Recognition in Bioinformatics, 2012

Predicting protein-RNA residue-base contacts using two-dimensional conditional random field.

Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu

Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011

Measuring the Similarity of Protein Structures Using Image Compression Algorithms.

Morihiro Hayashida, Tatsuya Akutsu

IEICE Trans. Inf. Syst., 2011

Conditional random field approach to prediction of protein-protein interactions using domain information.

Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu

BMC Syst. Biol., 2011

2010

Comparing biological networks via graph compression.

Morihiro Hayashida, Tatsuya Akutsu

BMC Syst. Biol., 2010

Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures.

Yang Zhao, Morihiro Hayashida, Tatsuya Akutsu

BMC Bioinform., 2010

The role of internal duplication in the evolution of multi-domain proteins.

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu

Biosyst., 2010

2009

Analyses and Algorithms for Predecessor and Control Problems for Boolean Networks of Bounded Indegree.

Tatsuya Akutsu, Morihiro Hayashida, Shuqin Zhang, Wai-Ki Ching, Michael K. Ng

Inf. Media Technol., 2009

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu

Biosyst., 2009

A Bipartite Graph Based Model of Protein Domain Networks.

Jose C. Nacher, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu

Proceedings of the Complex Sciences, 2009

Integer programming-based methods for attractor detection and control of boolean networks.

Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura

Proceedings of the 48th IEEE Conference on Decision and Control, 2009

2008

A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs.

Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi

Inf. Media Technol., 2008

Integer programming-based approach to allocation of reporter genes for cell array analysis.

Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu

Int. J. Bioinform. Res. Appl., 2008

Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks.

Morihiro Hayashida, Takeyuki Tamura, Tatsuya Akutsu, Shuqin Zhang, Wai-Ki Ching

EURASIP J. Bioinform. Syst. Biol., 2008

Image Compression-based Approach to Measuring the Similarity of Protein Structures.

Morihiro Hayashida, Tatsuya Akutsu

Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

Algorithms for Inference, Analysis and Control of Boolean Networks.

Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura

Proceedings of the Algebraic Biology, Third International Conference, 2008

2007

Topological aspects of protein networks.

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu

Proceedings of the Emergent Intelligence of Networked Agents, 2007

Algorithms for Finding Small Attractors in Boolean Networks.

Shuqin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael Kwok-Po Ng

EURASIP J. Bioinform. Syst. Biol., 2007

A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs.

Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006

Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints.

Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto

IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2006

On the Complexity of Finding Control Strategies for Boolean Networks.

Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng

Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006

2005

Fast image synthesis of virtual objects in a real scene with natural shadings.

Imari Sato, Morihiro Hayashida, Fumiyo Kai, Yoichi Sato, Katsushi Ikeuchi

Syst. Comput. Jpn., 2005

2004

Protein Threading with Profiles and Constraints.

Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto

Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003

Inferring strengths of protein-protein interactions from experimental data using linear programming.

Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003