Mingfu Shao

According to our database, Mingfu Shao authored at least 23 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads.

Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao

Proceedings of the 24th International Workshop on Algorithms in Bioinformatics, 2024

Accurate Assembly of Circular RNAs with TERRACE.

Tasfia Zahin, Qian Shi, Xiaofei Carl Zang, Mingfu Shao

Proceedings of the Research in Computational Molecular Biology, 2024

2023

Transcript assembly and annotations: Bias and adjustment.

Qimin Zhang, Mingfu Shao

PLoS Comput. Biol., December, 2023

Locality-sensitive bucketing functions for the edit distance.

Ke Chen, Mingfu Shao

Algorithms Mol. Biol., December, 2023

On the Maximal Independent Sets of k-mers with the Edit Distance.

Leran Ma, Ke Chen, Mingfu Shao

CoRR, 2023

Seeding with minimized subsequence.

Xiang Li, Qian Shi, Ke Chen, Mingfu Shao

Bioinform., 2023

On the Maximal Independent Sets of <i>k</i>-mers with the Edit Distance.

Leran Ma, Ke Chen, Mingfu Shao

Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

On de novo Bridging Paired-end RNA-seq Data.

Xiang Li, Mingfu Shao

Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022

Accurate assembly of multi-end RNA-seq data with Scallop2.

Qimin Zhang, Qian Shi, Mingfu Shao

Nat. Comput. Sci., 2022

2020

Context-aware seeds for read mapping.

Hongyi Xin, Mingfu Shao, Carl Kingsford

Algorithms Mol. Biol., 2020

2019

Theory and A Heuristic for the Minimum Path Flow Decomposition Problem.

Mingfu Shao, Carl Kingsford

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2017

On Computing Breakpoint Distances for Genomes with Duplicate Genes.

Mingfu Shao, Bernard M. E. Moret

J. Comput. Biol., 2017

DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields.

Mingfu Shao, Jianzhu Ma, Sheng Wang

Bioinform., 2017

2016

A Fast and Exact Algorithm for the Exemplar Breakpoint Distance.

Mingfu Shao, Bernard M. E. Moret

J. Comput. Biol., 2016

A maximum-likelihood approach for building cell-type trees by lifting.

Nishanth Ulhas Nair, Laura Hunter, Mingfu Shao, Paulina Grnarova, Yu Lin, Philipp Bucher, Bernard M. E. Moret

BMC Genom., 2016

2015

Models and Algorithms for Comparative Genomics.

Mingfu Shao

PhD thesis, 2015

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes.

Mingfu Shao, Yu Lin, Bernard M. E. Moret

J. Comput. Biol., 2015

Comparing genomes with rearrangements and segmental duplications.

Mingfu Shao, Bernard M. E. Moret

Bioinform., 2015

2014

An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes.

Mingfu Shao, Yu Lin, Bernard M. E. Moret

Proceedings of the Research in Computational Molecular Biology, 2014

On the DCJ Median Problem.

Mingfu Shao, Bernard M. E. Moret

Proceedings of the Combinatorial Pattern Matching - 25th Annual Symposium, 2014

2013

Sorting genomes with rearrangements and segmental duplications through trajectory graphs.

Mingfu Shao, Yu Lin, Bernard M. E. Moret

BMC Bioinform., 2013

2012

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion.

Mingfu Shao, Yu Lin

BMC Bioinform., 2012

2011

Incorporating Ab Initio energy into threading approaches for protein structure prediction.

Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu

BMC Bioinform., 2011