Ming Li
Orcid: 0000-0002-2157-2775Affiliations:
- University of Waterloo, ON, Canada
- Cornell University, Ithaca, NY, USA (former)
- York University, Toronto, Canada (former)
- Harvard University, Cambridge, MA, USA (former)
According to our database1,
Ming Li
authored at least 248 papers
between 1985 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Bibliography
2024
2023
Mitigating the missing-fragmentation problem in de novo peptide sequencing with a two-stage graph-based deep learning model.
Nat. Mac. Intell., October, 2023
2022
A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction.
Briefings Bioinform., 2022
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022
2021
ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices.
Nat. Mach. Intell., 2021
Multi-Task Dense Retrieval via Model Uncertainty Fusion for Open-Domain Question Answering.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2021, 2021
Unsupervised Chunking as Syntactic Structure Induction with a Knowledge-Transfer Approach.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2021, 2021
Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume, 2021
Semantics of the Unwritten: The Effect of End of Paragraph and Sequence Tokens on Text Generation with GPT2.
Proceedings of the ACL-IJCNLP 2021 Student Research Workshop, 2021
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021
2020
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines.
Nat. Mach. Intell., 2020
CoRR, 2020
To Paraphrase or Not To Paraphrase: User-Controllable Selective Paraphrase Generation.
CoRR, 2020
Distant Supervision for Multi-Stage Fine-Tuning in Retrieval-Based Question Answering.
Proceedings of the WWW '20: The Web Conference 2020, Taipei, Taiwan, April 20-24, 2020, 2020
Approximate Nearest Neighbor Search and Lightweight Dense Vector Reranking in Multi-Stage Retrieval Architectures.
Proceedings of the ICTIR '20: The 2020 ACM SIGIR International Conference on the Theory of Information Retrieval, 2020
Two Birds, One Stone: A Simple, Unified Model for Text Generation from Structured and Unstructured Data.
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020
2019
Texts in Computer Science, Springer, ISBN: 978-3-030-11297-4, 2019
Genom. Proteom. Bioinform., 2019
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019
Detecting Customer Complaint Escalation with Recurrent Neural Networks and Manually-Engineered Features.
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019
2018
Proceedings of the Computing and Combinatorics - 24th International Conference, 2018
2017
Enhanced question understanding with dynamic memory networks for textual question answering.
Expert Syst. Appl., 2017
2016
CoRR, 2016
Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies, 2016
2015
Proceedings of the 24th International Conference on World Wide Web Companion, 2015
2014
Knowl. Inf. Syst., 2014
J. Comput. Sci. Technol., 2014
Formal Models and Computability.
Proceedings of the Computing Handbook, 2014
2013
J. Comput. Biol., 2013
Determining Protein Structures from NOESY Distance Constraints by Semidefinite Programming.
J. Comput. Biol., 2013
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
Algorithms Mol. Biol., 2013
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Combining automated peak tracking in SAR by NMR with structure-based backbone assignment from <sup>15</sup>N-NOESY.
BMC Bioinform., 2012
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
Proceedings of the Research in Computational Molecular Biology, 2012
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
J. Comput. Sci. Technol., 2011
Towards Fully Automated Structure-Based NMR Resonance Assignment of <sup>15</sup>N-Labeled Proteins From Automatically Picked Peaks.
J. Comput. Biol., 2011
J. Bioinform. Comput. Biol., 2011
Proceedings of the Algorithmic Probability and Friends. Bayesian Prediction and Artificial Intelligence, 2011
Combining ambiguous chemical shift mapping with structure-based backbone and NOE assignment from <sup>15</sup>N-NOESY.
Proceedings of the ACM International Conference on Bioinformatics, 2011
Proceedings of the Algorithmic Learning Theory - 22nd International Conference, 2011
2010
J. Comput. Sci. Technol., 2010
J. Bioinform. Comput. Biol., 2010
Proceedings of the Research in Computational Molecular Biology, 2010
Proceedings of the COLING 2010, 2010
2009
J. Bioinform. Comput. Biol., 2009
Proceedings of the 2009 IEEE/WIC/ACM International Conference on Web Intelligence, 2009
Proceedings of the ICDM 2009, 2009
2008
Texts in Computer Science, Springer, ISBN: 978-0-387-49820-1, 2008
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008
J. Comput. Sci. Technol., 2008
Proceedings of the Research in Computational Molecular Biology, 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
Proceedings of the Combinatorial Pattern Matching, 19th Annual Symposium, 2008
Proceedings of the 17th ACM Conference on Information and Knowledge Management, 2008
2007
J. Comput. Syst. Sci., 2007
Average-case analysis of QuickSort and Binary Insertion Tree height using incompressibility.
Inf. Process. Lett., 2007
Proceedings of the 13th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007
Proceedings of the Combinatorial Pattern Matching, 18th Annual Symposium, 2007
Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007
2006
J. Bioinform. Comput. Biol., 2006
Int. J. Medical Informatics, 2006
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006
Proceedings of the Seventeenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2006
Proceedings of the Mathematical Foundations of Computer Science 2006, 2006
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006
2005
J. Comput. Biol., 2005
Bioinform., 2005
Discovering patterns to extract protein-protein interactions from the literature: Part II.
Bioinform., 2005
Proceedings of the Biocomputing 2005, 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
A New Algorithm for Pattern Optimization in Protein-Protein Interaction Extraction System.
Proceedings of the Pattern Recognition and Image Analysis, Second Iberian Conference, 2005
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005
2004
Protein Threading by Linear Programming: Theoretical Analysis and Computational Results.
J. Comb. Optim., 2004
J. Bioinform. Comput. Biol., 2004
J. Bioinform. Comput. Biol., 2004
Selecting the branches for an evolutionary tree.: A polynomial time approximation scheme.
J. Algorithms, 2004
Bioinform., 2004
Discovering Patterns to Extract Protein-Protein Interactions from Full Biomedical Texts.
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004
2003
J. Bioinform. Comput. Biol., 2003
Comput. Methods Programs Biomed., 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
2002
2001
An information-based sequence distance and its application to whole mitochondrial genome phylogeny.
Bioinform., 2001
2000
IEEE Trans. Inf. Theory, 2000
A Polynomial Time Approximation Scheme for Inferring Evolutionary Trees from Quartet Topologies and Its Application.
SIAM J. Comput., 2000
J. Comput. Sci. Technol., 2000
Proceedings of the SOFSEM 2000: Theory and Practice of Informatics, 27th Conference on Current Trends in Theory and Practice of Informatics, Milovy, Czech Republic, November 25, 2000
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000
A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract).
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000
1999
J. Algorithms, 1999
Algorithmica, 1999
Proceedings of the Thirty-First Annual ACM Symposium on Theory of Computing, 1999
Proceedings of the Tenth Annual ACM-SIAM Symposium on Discrete Algorithms, 1999
Proceedings of the Algorithms, 1999
Proceedings of the Discrete Mathematical Problems with Medical Applications, 1999
Proceedings of the 14th Annual IEEE Conference on Computational Complexity, 1999
Some Examples of Average-case Analysis by the Imcompressibility Method.
Proceedings of the Jewels are Forever, 1999
Proceedings of the Algorithms and Theory of Computation Handbook., 1999
Proceedings of the Algorithms and Theory of Computation Handbook., 1999
Proceedings of the Algorithms and Theory of Computation Handbook., 1999
1998
Theor. Comput. Sci., 1998
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998
Proceedings of the 39th Annual Symposium on Foundations of Computer Science, 1998
Proceedings of the Computing and Combinatorics, 4th Annual International Conference, 1998
Average-Case Analysis Using Kolgomorov Complexity (Abstract).
Proceedings of Computing: The Fourth Australasian Theory Symposium (CATS'98), 1998
1997
CoRR, 1997
Proceedings of the Eighth Annual ACM-SIAM Symposium on Discrete Algorithms, 1997
Proceedings of the Compression and Complexity of SEQUENCES 1997, 1997
Proceedings of the Fundamentals of Computation Theory, 11th International Symposium, 1997
Proceedings of the Machine Learning: ECML-97, 1997
Average-Case Analysis Using Kolmogorov Complexity.
Proceedings of the Advances in Algorithms, Languages, and Complexity, 1997
Shortest common superstrings.
Proceedings of the Pattern Matching Algorithms, 1997
Graduate Texts in Computer Science, Springer, ISBN: 978-1-4757-2606-0, 1997
Formal Models and Computability.
Proceedings of the Computer Science and Engineering Handbook, 1997
1996
Proceedings of the Computing and Combinatorics, Second Annual International Conference, 1996
Proceedings of the Eleveth Annual IEEE Conference on Computational Complexity, 1996
1995
SIAM J. Comput., 1995
On the Approximation of Shortest Common Supersequences and Longest Common Subsequences.
SIAM J. Comput., 1995
Proceedings of the Algorithms and Data Structures, 4th International Workshop, 1995
Proceedings of the STACS 95, 1995
Proceedings of the Algorithmic Learning Theory, 6th International Conference, 1995
Proceedings of the Computer Science Today: Recent Trends and Developments, 1995
1994
Math. Syst. Theory, 1994
Kolmogorov Complexity Arguments in Combinatorics.
J. Comb. Theory A, 1994
1993
Proceedings of the Algorithms and Data Structures, Third Workshop, 1993
Proceedings of the Twenty-Fifth Annual ACM Symposium on Theory of Computing, 1993
Texts and Monographs in Computer Science, Springer, ISBN: 978-1-4757-3860-5, 1993
1992
Average Case Complexity Under the Universal Distribution Equals Worst-Case Complexity.
Inf. Process. Lett., 1992
Proceedings of the Automata, Languages and Programming, 19th International Colloquium, 1992
1991
J. Comput. Syst. Sci., 1991
Proceedings of the Sixth Annual Structure in Complexity Theory Conference, Chicago, Illinois, USA, June 30, 1991
Proceedings of the 9th National Conference on Artificial Intelligence, 1991
An introduction to Kolmogorov - complexity and its applications ; part 1: theory.
CWI, 1991
1990
Proceedings of the 31st Annual Symposium on Foundations of Computer Science, 1990
Kolmogorov Complexity and its Applications.
Proceedings of the Handbook of Theoretical Computer Science, 1990
1989
Inf. Comput., November, 1989
Discret. Comput. Geom., 1989
The Minimum Description Length Principle and Its Application to Online Learning of Handprinted Characters.
Proceedings of the 11th International Joint Conference on Artificial Intelligence. Detroit, 1989
A New Approach to Formal Language Theory by Kolmogorov Complexity (Preliminary Version).
Proceedings of the Automata, Languages and Programming, 16th International Colloquium, 1989
Proceedings of the Automata, Languages and Programming, 16th International Colloquium, 1989
A Theory of Learning Simple Concepts Under Simple Distributions and Average Case Complexity for the Universal Distribution (Extended Abstract)
Proceedings of the 30th Annual Symposium on Foundations of Computer Science, Research Triangle Park, North Carolina, USA, 30 October, 1989
Proceedings of the Proceedings: Fourth Annual Structure in Complexity Theory Conference, 1989
1988
J. Comput. Syst. Sci., 1988
Inf. Process. Lett., 1988
Proceedings of the 20th Annual ACM Symposium on Theory of Computing, 1988
Proceedings of the First Annual Workshop on Computational Learning Theory, 1988
Two decades of applied Kolmogorov complexity: in memoriam Andrei Nikolaevich Kolmogorov 1903-87.
Proceedings of the Proceedings: Third Annual Structure in Complexity Theory Conference, 1988
1987
Separation and Lower Bounds for ROM and Nondeterministic Models of Parallel Computation
Inf. Comput., May, 1987
Proceedings of the 19th Annual ACM Symposium on Theory of Computing, 1987
Proceedings of the Sixth Annual ACM Symposium on Principles of Distributed Computing, 1987
Proceedings of the Automata, Languages and Programming, 14th International Colloquium, 1987
Proceedings of the 28th Annual Symposium on Foundations of Computer Science, 1987
1986
String-Matching Cannot be Done by a Two-Head One-Way Deterministic Finite Automation.
Inf. Process. Lett., 1986
Proceedings of the Automata, Languages and Programming, 13th International Colloquium, 1986
Proceedings of the 27th Annual Symposium on Foundations of Computer Science, 1986
1985
Lower Bounds in Computational Complexity.
PhD thesis, 1985
Proceedings of the Automata, 1985