Mile Sikic

According to our database, Mile Sikic authored at least 37 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Comparative analysis of metagenomic classifiers for long-read sequencing datasets.

Josip Maric, Kresimir Krizanovic, Sylvain Riondet, Niranjan Nagarajan, Mile Sikic

BMC Bioinform., December, 2024

RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks.

Rafael Josip Penic, Tin Vlasic, Roland G. Huber, Yue Wan, Mile Sikic

CoRR, 2024

Comparative Analysis of Nanopore-based Unsupervised Learning Methods in Epitranscriptomics.

Ivan Vujaklija, Sinisa Bidin, Mile Sikic

Proceedings of the 47th MIPRO ICT and Electronics Convention, 2024

2023

Reconstruction of short genomic sequences with graph convolutional networks.

Lovro Vrcek, Xavier Bresson, Thomas Laurent, Martin Schmitz, Mile Sikic

Proceedings of the 46th MIPRO ICT and Electronics Convention, 2023

Graph Neural Network Meets de Bruijn Genome Assembly.

Marijo Simunovic, Lovro Vrcek, Mile Sikic

Proceedings of the International Symposium on Image and Signal Processing and Analysis, 2023

Finding Hamiltonian Cycles with Graph Neural Networks.

Filip Bosnic, Mile Sikic

Proceedings of the International Symposium on Image and Signal Processing and Analysis, 2023

2022

Learning to Untangle Genome Assembly with Graph Convolutional Networks.

Lovro Vrcek, Xavier Bresson, Thomas Laurent, Martin Schmitz, Mile Sikic

CoRR, 2022

2021

Time- and memory-efficient genome assembly with Raven.

Robert Vaser, Mile Sikic

Nat. Comput. Sci., 2021

2020

A step towards neural genome assembly.

Lovro Vrcek, Petar Velickovic, Mile Sikic

CoRR, 2020

2019

Read classification using semi-supervised deep learning.

Tomislav Sebrek, Jan Tomljanovic, Josip Krapac, Mile Sikic

CoRR, 2019

MinCall - MinION end2end convolutional deep learning basecaller.

Neven Miculinic, Marko Ratkovic, Mile Sikic

CoRR, 2019

Disentangling Sources of Influence in Online Social Networks.

Matija Piskorec, Tomislav Smuc, Mile Sikic

IEEE Access, 2019

Approaches to metagenomic classification and assembly.

Josip Maric, Mile Sikic

Proceedings of the 42nd International Convention on Information and Communication Technology, 2019

Yet another de novo genome assembler.

Robert Vaser, Mile Sikic

Proceedings of the 11th International Symposium on Image and Signal Processing and Analysis, 2019

2018

Evaluation of tools for long read RNA-seq splice-aware alignment.

Kresimir Krizanovic, Amina Echchiki, Julien Roux, Mile Sikic

Bioinform., 2018

Fast and Simple Algorithms for Computing both LCS_k and LCS_k+.

Filip Pavetic, Ivan Katanic, Gustav Matula, Goran Zuzic, Mile Sikic

Proceedings of the Prague Stringology Conference 2018, 2018

2017

Fast and simple algorithms for computing both $LCS_{k}$ and $LCS_{k+}$.

Filip Pavetic, Ivan Katanic, Gustav Matula, Goran Zuzic, Mile Sikic

CoRR, 2017

Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance.

Martin Sosic, Mile Sikic

Bioinform., 2017

Trade-offs in Query and Target Indexing for the Selection of Candidates in Protein Homology Searches.

Strahil Ristov, Robert Vaser, Mile Sikic

Proceedings of the Prague Stringology Conference 2017, 2017

Unsupervised Learning of Sequencing Read Types.

Jan Tomljanovic, Tomislav Sebrek, Mile Sikic

Proceedings of the 2017 International Conference on Computational Biology and Bioinformatics, 2017

Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia.

Matija Piskorec, Nino Antulov-Fantulin, Iva Miholic, Tomislav Smuc, Mile Sikic

Proceedings of the Complex Networks & Their Applications VI, 2017

2016

Modeling peer and external influence in online social networks.

Matija Piskorec, Nino Antulov-Fantulin, Iva Miholic, Tomislav Smuc, Mile Sikic

CoRR, 2016

SWORD - a highly efficient protein database search.

Robert Vaser, Dario Pavlovic, Mile Sikic

Bioinform., 2016

Evaluation of hybrid and non-hybrid methods for <i>de novo</i> assembly of nanopore reads.

Ivan Sovic, Kresimir Krizanovic, Karolj Skala, Mile Sikic

Bioinform., 2016

2015

Some new results on assessment of Q-gram filter efficiency.

Andrej Novák, Kresimir Krizanovic, Alen Lancic, Mile Sikic

Proceedings of the 9th International Symposium on Image and Signal Processing and Analysis, 2015

2014

ExoLocator - an online view into genetic makeup of vertebrate proteins.

Aik Aun Khoo, Mario Ogrizek-Tomas, Ana Bulovic, Matija Korpar, Ece Gürler, Ivan Slijepcevic, Mile Sikic, Ivana Mihalek

Nucleic Acids Res., 2014

$LCSk$++: Practical similarity metric for long strings.

Filip Pavetic, Goran Zuzic, Mile Sikic

CoRR, 2014

Detectability limits of epidemic sources in networks.

Nino Antulov-Fantulin, Alen Lancic, Tomislav Smuc, Hrvoje Stefancic, Mile Sikic

CoRR, 2014

Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures.

Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic, Tomislav Smuc

Proceedings of the Eighth IEEE International Conference on Self-Adaptive and Self-Organizing Systems Workshops, 2014

2013

FastSIR algorithm: A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible-infected-recovered compartment model.

Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic

Inf. Sci., 2013

SW#-GPU-enabled exact alignments on genome scale.

Matija Korpar, Mile Sikic

Bioinform., 2013

2012

BioMe: biologically relevant metals.

Alan Tus, Alen Rakipovic, Goran Peretin, Sanja Tomic, Mile Sikic

Nucleic Acids Res., 2012

FastSIR Algorithm: A Fast Algorithm for simulation of epidemic spread in large networks by using SIR compartment model

Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic

CoRR, 2012

CUDA implementation of the algorithm for simulating the epidemic spreading over large networks.

Matija Sosic, Mile Sikic

Proceedings of the 2012 Proceedings of the 35th International Convention, 2012

2011

Epidemic centrality and the underestimated epidemic impact on network peripheral nodes

Mile Sikic, Alen Lancic, Nino Antulov-Fantulin, Hrvoje Stefancic

CoRR, 2011

2009

Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests.

Mile Sikic, Sanja Tomic, Kristian Vlahovicek

PLoS Comput. Biol., 2009

2008

Comparison of the RADIUS and Diameter protocols.

Mladen Stanke, Mile Sikic

Proceedings of the ITI 2008 30th International Conference on Information Technology Interfaces, 2008