Milan Sonka

Orcid: 0000-0002-9613-9968

Affiliations:
  • University of Iowa, Iowa City, IA, USA


According to our database1, Milan Sonka authored at least 247 papers between 1989 and 2024.

Collaborative distances:

Awards

IEEE Fellow

IEEE Fellow 2002, "For contributions to medical image analysis and computer vision.".

Timeline

Legend:

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Links

Online presence:

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Bibliography

2024
Spectral U-Net: Enhancing Medical Image Segmentation via Spectral Decomposition.
CoRR, 2024

FiAt-Net: Detecting Fibroatheroma Plaque Cap in 3D Intravascular OCT Images.
CoRR, 2024

Denoising Diffusions in Latent Space for Medical Image Segmentation.
CoRR, 2024

PHG-Net: Persistent Homology Guided Medical Image Classification<sup>*</sup>.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024

Group Vision Transformer.
Proceedings of the 32nd ACM International Conference on Multimedia, MM 2024, Melbourne, VIC, Australia, 28 October 2024, 2024

Surf-CDM: Score-Based Surface Cold-Diffusion Model for Medical Image Segmentation.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023
Sensitivity of CNN image analysis to multifaceted measurements of neurite growth.
BMC Bioinform., December, 2023

Segmentation quality assessment by automated detection of erroneous surface regions in medical images.
Comput. Biol. Medicine, September, 2023

Synthetic Nodules for Evaluation of 3D Deep Learning Segmentation Attribution.
Dataset, March, 2023

U-Net v2: Rethinking the Skip Connections of U-Net for Medical Image Segmentation.
CoRR, 2023

PHG-Net: Persistent Homology Guided Medical Image Classification.
CoRR, 2023

Provable Multi-instance Deep AUC Maximization with Stochastic Pooling.
Proceedings of the International Conference on Machine Learning, 2023

Trust, but Verify: Robust Image Segmentation using Deep Learning.
Proceedings of the 57th Asilomar Conference on Signals, Systems, and Computers, ACSSC 2023, Pacific Grove, CA, USA, October 29, 2023

2022
CMC-Net: 3D calf muscle compartment segmentation with sparse annotation.
Medical Image Anal., 2022

KCB-Net: A 3D knee cartilage and bone segmentation network via sparse annotation.
Medical Image Anal., 2022

Visual attribution for deep learning segmentation in medical imaging.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

Semi-automated intracranial aneurysm segmentation and neck detection.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

2021
Fully automated 3D segmentation of MR-imaged calf muscle compartments: Neighborhood relationship enhanced fully convolutional network.
Comput. Medical Imaging Graph., 2021

Large-scale Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021

2020
Deep-COVID: Predicting COVID-19 from chest X-ray images using deep transfer learning.
Medical Image Anal., 2020

Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification.
CoRR, 2020

COVID CT-Net: Predicting Covid-19 From Chest CT Images Using Attentional Convolutional Network.
CoRR, 2020

COVID TV-UNet: Segmenting COVID-19 Chest CT Images Using Connectivity Imposed U-Net.
CoRR, 2020

FilterNet: A Neighborhood Relationship Enhanced Fully Convolutional Network for Calf Muscle Compartment Segmentation.
CoRR, 2020

Multiresolution LOGISMOS graph search for automated choroidal layer segmentation of 3D macular OCT scans.
Proceedings of the Medical Imaging 2020: Image Processing, 2020

2019
Just-Enough Interaction Approach to Knee MRI Segmentation: Data from the Osteoarthritis Initiative.
CoRR, 2019

Learning-Based Cost Functions for 3D and 4D Multi-Surface Multi-Object Segmentation of Knee MRI: Data from the Osteoarthritis Initiative.
CoRR, 2019

DeepCenterline: A Multi-task Fully Convolutional Network for Centerline Extraction.
Proceedings of the Information Processing in Medical Imaging, 2019

2018
Predicting Locations of High-Risk Plaques in Coronary Arteries in Patients Receiving Statin Therapy.
IEEE Trans. Medical Imaging, 2018

Learning-Based Cost Functions for 3-D and 4-D Multi-Surface Multi-Object Segmentation of Knee MRI: Data From the Osteoarthritis Initiative.
IEEE Trans. Medical Imaging, 2018

Quantitative 3D Analysis of Coronary Wall Morphology in Heart Transplant Patients: OCT-Assessed Cardiac Allograft Vasculopathy Progression.
Medical Image Anal., 2018

Deep LOGISMOS: Deep Learning Graph-based 3D Segmentation of Pancreatic Tumors on CT scans.
CoRR, 2018

Deep LOGISMOS: Deep learning graph-based 3D segmentation of pancreatic tumors on CT scans.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
CorteXpert: A model-based method for automatic renal cortex segmentation.
Medical Image Anal., 2017

A machine-learning graph-based approach for 3D segmentation of Bruch's membrane opening from glaucomatous SD-OCT volumes.
Medical Image Anal., 2017

Graph-based segmentation of abnormal nuclei in cervical cytology.
Comput. Medical Imaging Graph., 2017

Machine learning in a graph framework for subcortical segmentation.
Proceedings of the Medical Imaging 2017: Image Processing, 2017

Combining fully convolutional networks and graph-based approach for automated segmentation of cervical cell nuclei.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms.
Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Efficient Optimization for Hierarchically-Structured Interacting Segments (HINTS).
Proceedings of the 2017 IEEE Conference on Computer Vision and Pattern Recognition, 2017

2016
Quantitative analysis of retinal OCT.
Medical Image Anal., 2016

Optimal retinal cyst segmentation from OCT images.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Globally Optimal Label Fusion with Shape Priors.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Comparative study of multimodal intra-subject image registration methods on a publicly available database.
Proceedings of the Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, California, United States, 27 February, 2016

Comprehensive serial study of dynamic remodeling of atherosclerotic coronary arteries using IVUS.
Proceedings of the Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, California, United States, 27 February, 2016

Location-specific prediction of vulnerable plaque using IVUS, virtual histology, and spatial context.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Statistical shape analysis of automatically segmented femur bones: Data from the osteoarthritis initiative.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Hedgehog Shape Priors for Multi-Object Segmentation.
Proceedings of the 2016 IEEE Conference on Computer Vision and Pattern Recognition, 2016

2015
Simultaneous Registration of Location and Orientation in Intravascular Ultrasound Pullbacks Pairs Via 3D Graph-Based Optimization.
IEEE Trans. Medical Imaging, 2015

Stratified Sampling Voxel Classification for Segmentation of Intraretinal and Subretinal Fluid in Longitudinal Clinical OCT Data.
IEEE Trans. Medical Imaging, 2015

Automated 3-D Retinal Layer Segmentation of Macular Optical Coherence Tomography Images With Serous Pigment Epithelial Detachments.
IEEE Trans. Medical Imaging, 2015

Joint registration of location and orientation of intravascular ultrasound pullbacks using a 3D graph based method.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

LOGISMOS-B for primates: primate cortical surface reconstruction and thickness measurement.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Fast and memory-efficient LOGISMOS graph search for intraretinal layer segmentation of 3D macular OCT scans.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Improved segmentation of abnormal cervical nuclei using a graph-search based approach.
Proceedings of the Medical Imaging 2015: Digital Pathology, 2015

Prospective Prediction of Thin-Cap Fibroatheromas from Baseline Virtual Histology Intravascular Ultrasound Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

2014
LOGISMOS-B: Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces for the Brain.
IEEE Trans. Medical Imaging, 2014

Multi-Surface and Multi-Field Co-Segmentation of 3-D Retinal Optical Coherence Tomography.
IEEE Trans. Medical Imaging, 2014

Robust Cortical Thickness Measurement with LOGISMOS-B.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Automated surface segmentation of internal limiting membrane in spectral-domain optical coherence tomography volumes with a deep cup using a 3-D range expansion approach.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
Graph-Based IVUS Segmentation With Efficient Computer-Aided Refinement.
IEEE Trans. Medical Imaging, 2013

Optimal Multiple Surface Segmentation With Shape and Context Priors.
IEEE Trans. Medical Imaging, 2013

Optimal Graph Search Based Segmentation of Airway Tree Double Surfaces Across Bifurcations.
IEEE Trans. Medical Imaging, 2013

Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map.
Medical Image Anal., 2013

Optical Coherence Tomography Noise Reduction Using Anisotropic Local Bivariate Gaussian Mixture Prior in 3D Complex Wavelet Domain.
Int. J. Biomed. Imaging, 2013

Thickness Mapping of Eleven Retinal Layers in Normal Eyes Using Spectral Domain Optical Coherence Tomography.
CoRR, 2013

Lung segmentation refinement based on optimal surface finding utilizing a hybrid desktop/virtual reality user interface.
Comput. Medical Imaging Graph., 2013

Graph-based 4D lung segmentation in CT images with expert-guided computer-aided refinement.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Automated analysis of cartilage morphology.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Intra-retinal layer segmentation of optical coherence tomography using diffusion map.
Proceedings of the IEEE International Conference on Acoustics, 2013

Vessel segmentation in images of optical coherence tomography using shadow information and thickening of Retinal Nerve Fiber Layer.
Proceedings of the IEEE International Conference on Acoustics, 2013

2012
Three-Dimensional Segmentation of Fluid-Associated Abnormalities in Retinal OCT: Probability Constrained Graph-Search-Graph-Cut.
IEEE Trans. Medical Imaging, 2012

Registration of 3D spectral OCT volumes combining ICP with a graph-based approach.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Parallel graph search: application to intraretinal layer segmentation of 3-D macular OCT scans.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Incorporation of texture-based features in optimal graph-theoretic approach with application to the 3D segmentation of intraretinal surfaces in SD-OCT volumes.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Efficient searching of globally optimal and smooth multisurfaces with shape priors.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

2011
Vessel Boundary Delineation on Fundus Images Using Graph-Based Approach.
IEEE Trans. Medical Imaging, 2011

Region Detection by Minimizing Intraclass Variance With Geometric Constraints, Global Optimality, and Efficient Approximation.
IEEE Trans. Medical Imaging, 2011

A New Osteophyte Segmentation Algorithm Using the Partial Shape Model and Its Applications to Rabbit Femur Anterior Cruciate Ligament Transection via Micro-CT Imaging.
IEEE Trans. Biomed. Eng., 2011

Improved tensor scale computation with application to medical image interpolation.
Comput. Medical Imaging Graph., 2011

Faster Segmentation Algorithm for Optical Coherence Tomography Images with Guaranteed Smoothness.
Proceedings of the Machine Learning in Medical Imaging - Second International Workshop, 2011

Segmentation of pathological and diseased lung tissue in CT images using a graph-search algorithm.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Maximum Weight Digital Regions Decomposable into Digital Star-Shaped Regions.
Proceedings of the Algorithms and Computation - 22nd International Symposium, 2011

Efficient Algorithms for Segmenting Globally Optimal and Smooth Multi-surfaces.
Proceedings of the Information Processing in Medical Imaging, 2011

Surface-Region Context in Optimal Multi-object Graph-Based Segmentation: Robust Delineation of Pulmonary Tumors.
Proceedings of the Information Processing in Medical Imaging, 2011

Globally Optimal Tumor Segmentation in PET-CT Images: A Graph-Based Co-segmentation Method.
Proceedings of the Information Processing in Medical Imaging, 2011

Signal processing in medical imaging and image-guided intervention.
Proceedings of the IEEE International Conference on Acoustics, 2011

IVUS-based assessment of 3D morphology and virtual histology: Prediction of atherosclerotic plaque status and changes.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Feature guided motion artifact reduction with structure-awareness in 4D CT images.
Proceedings of the 24th IEEE Conference on Computer Vision and Pattern Recognition, 2011

2010
Optimal multiple-seams search for image resizing with smoothness and shape prior.
Vis. Comput., 2010

4-D Cardiac MR Image Analysis: Left and Right Ventricular Morphology and Function.
IEEE Trans. Medical Imaging, 2010

LOGISMOS - Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces: Cartilage Segmentation in the Knee Joint.
IEEE Trans. Medical Imaging, 2010

Topomorphologic Separation of Fused Isointensity Objects via Multiscale Opening: Separating Arteries and Veins in 3-D Pulmonary CT.
IEEE Trans. Medical Imaging, 2010

Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula.
IEEE Trans. Medical Imaging, 2010

Segmentation of the Optic Disc in 3-D OCT Scans of the Optic Nerve Head.
IEEE Trans. Medical Imaging, 2010

Three-dimensional thrombus segmentation in abdominal aortic aneurysms using graph search based on a triangular mesh.
Comput. Biol. Medicine, 2010

Electric field theory based approach to search-direction line definition in image segmentation: application to optimal femur-tibia cartilage segmentation in knee-joint 3-D MR.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

A new osteophyte segmentation method with applications to an anterior cruciate ligament transection rabbit femur model via micro-CT imaging.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Multiscale topo-morphologic opening of arteries and veins: a validation study on phantoms and CT imaging of pulmonary vessel casting of pigs.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Graph Search with Appearance and Shape Information for 3-D Prostate and Bladder Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Motion Artifact Reduction in 4D Helical CT: Graph-Based Structure Alignment.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2010

Multi-scale Topo-morphometric Opening of Arteries and Veins: An Evaluative Study via Pulmonary CT Imaging.
Proceedings of the Advances in Visual Computing - 6th International Symposium, 2010

Shape and motion analysis of left ventricle dyssynchrony from real-time 3D echocardiography.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Simultaneous searching of globally optimal interacting surfaces with shape priors.
Proceedings of the Twenty-Third IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009
Editorial.
IEEE Trans. Medical Imaging, 2009

Automated 3-D Intraretinal Layer Segmentation of Macular Spectral-Domain Optical Coherence Tomography Images.
IEEE Trans. Medical Imaging, 2009

Congenital aortic disease: 4D magnetic resonance segmentation and quantitative analysis.
Medical Image Anal., 2009

Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images.
Int. J. Biomed. Imaging, 2009

Simultaneous segmentation of the bone and cartilage surfaces of a knee joint in 3D.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Recent improvements in tensor scale computation and its applications to medical imaging.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Globally optimal 3D graph search incorporating both edge and regional information: application to aortic MR image segmentation.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

A novel multiscale topo-morphometric approach for separating arteries and veins via pulmonary CT imaging.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Registration of 3D spectral OCT volumes using 3D SIFT feature point matching.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Optimal graph search based image segmentation for objects with complex topologies.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Optimal Graph Search Segmentation Using Arc-Weighted Graph for Simultaneous Surface Detection of Bladder and Prostate.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Optimal multiple surfaces searching for video/image resizing - a graph-theoretic approach.
Proceedings of the IEEE 12th International Conference on Computer Vision, ICCV 2009, Kyoto, Japan, September 27, 2009

Electric Field Theory Motivated Graph Construction for Optimal Medical Image Segmentation.
Proceedings of the Graph-Based Representations in Pattern Recognition, 2009

2008
Intraretinal Layer Segmentation of Macular Optical Coherence Tomography Images Using Optimal 3-D Graph Search.
IEEE Trans. Medical Imaging, 2008

Vessel segmentation in 3D spectral OCT scans of the retina.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Knowledge-Based Approaches to Quantitative Medical Image Analysis and Image-Based Decision Making.
Proceedings of the Frontiers in Algorithmics, Second Annual International Workshop, 2008

Globally optimal surface segmentation using regional properties of segmented objects.
Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

Image processing, analysis and and machine vision (3. ed.).
Thomson, ISBN: 978-0-495-24438-7, 2008

2007
The Layered Net Surface Problems in Discrete Geometry and Medical Image Segmentation.
Int. J. Comput. Geom. Appl., 2007

Active index model: a unique approach for regional quantitative morphometry in longitudinal and cross-sectional studies.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Segmentation of the optic nerve head combining pixel classification and graph search.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Automated segmentation of intraretinal layers from macular optical coherence tomography images.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

A New Method for Spherical Object Detection and Its Application to Computer Aided Detection of Pulmonary Nodules in CT Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Use of Varying Constraints in Optimal 3-D Graph Search for Segmentation of Macular Optical Coherence Tomography Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Pulmonary CT Image Analysis and Computer Aided Detection.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Incorporation of Regional Information in Optimal 3-D Graph Search with Application for Intraretinal Layer Segmentation of Optical Coherence Tomography Images.
Proceedings of the Information Processing in Medical Imaging, 2007

2006
MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies.
IEEE Trans. Medical Imaging, 2006

Automated contour detection in X-ray left ventricular angiograms using multiview active appearance models and dynamic programming.
IEEE Trans. Medical Imaging, 2006

Optimal Surface Segmentation in Volumetric Images-A Graph-Theoretic Approach.
IEEE Trans. Pattern Anal. Mach. Intell., 2006

Plaque development, vessel curvature, and wall shear stress in coronary arteries assessed by X-ray angiography and intravascular ultrasound.
Medical Image Anal., 2006

Quantitative analysis of pulmonary airway tree structures.
Comput. Biol. Medicine, 2006

Quantitative analysis of two-phase 3D+time aortic MR images.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Computerized detection of pulmonary nodules using a combination of 3D global and local shape information based on helical CT images.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Automatic segmentation of pulmonary fissures in x-ray CT images using anatomic guidance.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Segmentation of the Surfaces of the Retinal Layer from OCT Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Detection of Connective Tissue Disorders from 3D Aortic MR Images Using Independent Component Analysis.
Proceedings of the Computer Vision Approaches to Medical Image Analysis, 2006

Automated 4D Segmentation of Aortic Magnetic Resonance Images.
Proceedings of the British Machine Vision Conference 2006, 2006

3D Active Shape and Appearance Models in Cardiac Image Analysis.
Proceedings of the Handbook of Mathematical Models in Computer Vision, 2006

2005
Matching and anatomical labeling of human airway tree.
IEEE Trans. Medical Imaging, 2005

Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans.
IEEE Trans. Medical Imaging, 2005

Robust active appearance models and their application to medical image analysis.
IEEE Trans. Medical Imaging, 2005

3D segmentation of non-isolated pulmonary nodules in high resolution CT images.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

A complete CAD system for pulmonary nodule detection in high resolution CT images.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Multidimensional segmentation of coronary intravascular ultrasound images using knowledge-based methods.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Cell Segmentation, Tracking, and Mitosis Detection Using Temporal Context.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Automated Detection of Small-Size Pulmonary Nodules Based on Helical CT Images.
Proceedings of the Information Processing in Medical Imaging, 2005

Simultaneous Segmentation of Multiple Closed Surfaces Using Optimal Graph Searching.
Proceedings of the Information Processing in Medical Imaging, 2005

Robust Active Appearance Model Matching.
Proceedings of the Information Processing in Medical Imaging, 2005

Analysis of the Interdependencies Among Plaque Development, Vessel Curvature, and Wall Shear Stress in Coronary Arteries.
Proceedings of the Functional Imaging and Modeling of the Heart, 2005

Automated Segmentation of X-ray Left Ventricular Angiograms Using Multi-View Active Appearance Models and Dynamic Programming.
Proceedings of the Functional Imaging and Modeling of the Heart, 2005

A Robust Matching Algorithm for Active Appearance Models.
Proceedings of the Bildverarbeitung für die Medizin 2005, Algorithmen - Systeme, 2005

2004
Interactive virtual endoscopy in coronary arteries based on multimodality fusion.
IEEE Trans. Medical Imaging, 2004

Curvature estimation of arbitrary discrete 3D surfaces using partial derivatives based on distance maps.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Computerized detection of pulmonary nodules using cellular neural networks in CT images.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Segmentation and quantitative analysis of the living tumor cells using large-scale digital cell analysis system.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Efficient optimal surface detection: theory, implementation, and experimental validation.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Liver segment approximation in CT data for surgical resection planning.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Mitotic cell recognition with hidden Markov models.
Proceedings of the Medical Imaging 2004: Visualization, 2004

Quantitative Analysis of Circumferential Plaque Distribution in Human Coronary Arteries in Relation to Local Vessel Curvature.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Assessment of Intrathoracic Airway Trees: Methods and In Vivo Validation.
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004

Globally Optimal Segmentation of Interacting Surfaces with Geometric Constraints.
Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June, 2004

Real-time three-dimensional digital Doppler method based on Gaussian control surface for measurement of flow volumes.
Proceedings of the CARS 2004. Computer Assisted Radiology and Surgery. Proceedings of the 18th International Congress and Exhibition, 2004

Segmentation of intravascular ultrasound images: a machine learning approach mimicking human vision.
Proceedings of the CARS 2004. Computer Assisted Radiology and Surgery. Proceedings of the 18th International Congress and Exhibition, 2004

2003
Effects of vessel geometry and catheter position on dose delivery in intracoronary brachytherapy.
IEEE Trans. Biomed. Eng., 2003

Editorial.
EURASIP J. Adv. Signal Process., 2003

Vascular MR segmentation: wall and plaque.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Quantitative analysis of three-dimensional tubular tree structures.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Left ventricle contour detection in x-ray angiograms using multi-view active appearance models.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Disease characterization of active appearance model coefficients.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Automated classification of wall motion abnormalities by principal component analysis of endocardial shape motion patterns in echocardiograms.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Estimating the actual dose delivered by intravascular coronary brachytherapy using geometrically correct 3D modeling.
Proceedings of the Medical Imaging 2003: Visualization, 2003

Computer-aided liver surgery planning: an augmented reality approach.
Proceedings of the Medical Imaging 2003: Visualization, 2003

ICA vs. PCA Active Appearance Models: Application to Cardiac MR Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Quantitative Analysis of Intrathoracic Airway Trees: Methods and Validation.
Proceedings of the Information Processing in Medical Imaging, 2003

Multi-view Active Appearance Models: Application to X-Ray LV Angiography and Cardiac MRI.
Proceedings of the Information Processing in Medical Imaging, 2003

Computer-aided diagnosis via model-based shape analysis: cardiac.
Proceedings of the CARS 2003. Computer Assisted Radiology and Surgery. Proceedings of the 17th International Congress and Exhibition, 2003

Integrated system for quantitative analysis of coronary plaque via data fusion of biplane angiography and intravascular ultrasound.
Proceedings of the CARS 2003. Computer Assisted Radiology and Surgery. Proceedings of the 17th International Congress and Exhibition, 2003

Multi-view active appearance models for consistent segmentation of multiple standard views: application to long and short-axis cardiac MR images.
Proceedings of the CARS 2003. Computer Assisted Radiology and Surgery. Proceedings of the 17th International Congress and Exhibition, 2003

Computer Aided Liver Surgery Planning Based on Augmented Reality Techniques.
Proceedings of the Bildverarbeitung für die Medizin 2003, Algorithmen - Systeme, 2003

2002
Automated Analysis of Brachial Ultrasound Image Sequences: Early Detection of Cardiovascular Disease via Surrogates of Endothelial Function.
IEEE Trans. Medical Imaging, 2002

Image Processing and Analysis in Drug Discovery and Clinical Trials.
IEEE Trans. Medical Imaging, 2002

3-D Active Appearance Models: Segmentation of Cardiac MR and Ultrasound Images.
IEEE Trans. Medical Imaging, 2002

Automatic Segmentation of Echocardiographic Sequences by Active Appearance Motion Models.
IEEE Trans. Medical Imaging, 2002

Segmentation of cardiac MR volume data using 3D active appearance models.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

Fully automated endocardial contour detection in time sequences of echocardiograms by three-dimensional active appearance models.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

Diaphragm dome surface segmentation in CT data sets: a 3D active appearance model approach.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

Segmentation, Skeletonization, and Branchpoint Matching - A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Automated Nomenclature Labeling of the Bronchial Tree in 3D-CT Lung Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Assessment of plaque stability by means of high-resolution MRI and finite element analyses of local stresses and strains.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

Volumetric quantification of coronary arteries reconstructed by fusion between intravascular ultrasound and biplane angiography.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

Integrated system for CT-based assessment of parenchymal lung disease.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

2001
Automated Analysis of Doppler Ultrasound Velocity Flow Diagrams.
IEEE Trans. Medical Imaging, 2001

Handbook of Medical Imaging - Processing and Analysis I.N..
IEEE Trans. Medical Imaging, 2001

Multistage Hybrid Active Appearance Model Matching: Segmentation of Left and Right Ventricles in Cardiac MR Images.
IEEE Trans. Medical Imaging, 2001

Four-dimensional coronary morphology and computational hemodynamics.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Time-continuous segmentation of cardiac MR image sequences using active appearance motion models.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Active appearance motion models for endocardial contour detection in time sequences of echocardiograms.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Integrated System for Objective Assessment of Global and Regional Lung Structure.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Time-Continuous Segmentation of Cardiac Image Sequences Using Active Appearance Motion Models.
Proceedings of the Information Processing in Medical Imaging, 2001

Shape- and appearance-based segmentation of volumetric medical images.
Proceedings of the 2001 International Conference on Image Processing, 2001

Active Appearance Motion Model Segmentation.
Proceedings of the 2nd International Workshop on Digital and Computational Video (DCV 2001), 2001

Visualization of human coronary arteries with quantification results from 3-D and 4-D computational hemodynamics based upon virtual endoscopy.
Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

Cardiovascular image analysis: past, present and future.
Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

Time continuous segmentation of cardiac MR images using Active Appearance Motion Models.
Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

Active Appearance - Motion Models for fully automated endocardial contour detection in time sequences of echocardiograms.
Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

2000
Object Localization and Border Detection Criteria Design in Edge-Based Image Segmentation: Automated Learning from Examples.
IEEE Trans. Medical Imaging, 2000

Anatomical Modeling with Fuzzy Implicit Surface Templates: Application to Automated Localization of the Heart and Lungs in Thoracic MR Volumes.
Comput. Vis. Image Underst., 2000

Analysis of Volumetric Images.
Comput. Vis. Image Underst., 2000

Directional 3D Edge Detection in Anisotropic Data: Detector Design and Performance Assessment.
Comput. Vis. Image Underst., 2000

Quantitative Measurements in Geometrically Correct Representations of Coronary Vessels in 3-D and 4-D.
Proceedings of the 4th IEEE Southwest Symposium on Image Analysis and Interpretation, 2000

Automated Initialization and Automated Design of Border Detection Criteria in Edge-Based Image Segmentation.
Proceedings of the 4th IEEE Southwest Symposium on Image Analysis and Interpretation, 2000

Determination of the envelope function (maximum velocity curve) in Doppler ultrasound flow velocity diagrams.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

Segmentation of cardiac MR images: an active appearance model approach.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

1999
Geometrically Correct 3-D Reconstruction of Intravascular Ultrasound Images by Fusion with Biplane Angiography - Methods and Validation.
IEEE Trans. Medical Imaging, 1999

Fusion of angiography and intravascular ultrasound in vivo: establishing the absolute 3-D frame orientation.
IEEE Trans. Biomed. Eng., 1999

Medical image segmentation: Automated design of border detection criteria from examples.
J. Electronic Imaging, 1999

Automated calculation of the axial orientation of intravascular ultrasound images by fusion with biplane angiography.
Proceedings of the Medical Imaging 1999: Image Processing, 1999

Anatomical Modeling with Fuzzy Implicit Surfaces: Application to Automated Localization of the Heart and Lungs in Thoracic MR Images.
Proceedings of the Information Processing in Medical Imaging, 1999

Learning Shape Models from Examples Using Automatic Shape Clustering and Procrustes Analysis.
Proceedings of the Information Processing in Medical Imaging, 1999

1998
Tissue Characterization in Intravascular Ultrasound Images.
IEEE Trans. Medical Imaging, 1998

Segmentation of Intrathoracic Airway Trees: A Fuzzy Logic Approach.
IEEE Trans. Medical Imaging, 1998

Ovarian Ultrasound Image Analysis: Follicle Segmentation .
IEEE Trans. Medical Imaging, 1998

Segmentation and Interpretation of MR Brain Images: An Improved Active Shape Model.
IEEE Trans. Medical Imaging, 1998

Teaching digital image processing and computer vision in a quantitative imaging electronic classroom.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

3D catheter path reconstruction from biplane angiograms.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

Automated follicle analysis in ovarian ultrasound.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

3-D Fusion of Biplane Angiography and Intravascular Ultrasound for Accurate Visualization and Volumetry.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

1997
Adaptive Approach to Accurate Analysis of Small-Diameter Vessels in Cineangiograms.
IEEE Trans. Medical Imaging, 1997

Segmentation and Interpretation of MR Brain Images Using an Improved Knowledge-Based Active Shape Model.
Proceedings of the Information Processing in Medical Imaging, 1997

Local Three-Dimensional Shape-Preserving Smoothing without Shrinkage.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

An Improved Active Shape Model: Handling Occlusion and Outliers.
Proceedings of the Image Analysis and Processing, 9th International Conference, 1997

1996
Knowledge-based interpretation of MR brain images.
IEEE Trans. Medical Imaging, 1996

Rule-based detection of intrathoracic airway trees.
IEEE Trans. Medical Imaging, 1996

A Fully Parallel 3D Thinning Algorithm and Its Applications.
Comput. Vis. Image Underst., 1996

Fuzzy logic approach to extraction of intrathoracic airway trees from three-dimensional CT images.
Proceedings of the Medical Imaging 1996: Image Processing, 1996

1995
Segmentation of intravascular ultrasound images: a knowledge-based approach.
IEEE Trans. Medical Imaging, 1995

Robust simultaneous detection of coronary borders in complex images.
IEEE Trans. Medical Imaging, 1995

Tree pruning strategy in automated detection of coronary trees in cineangiograms.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995

Image processing, analysis and machine vision.
Chapman and Hall computing series, Chapman and Hall, ISBN: 978-0-412-45570-4, 1995

1994
Lumen centerline detection in complex coronary angiograms.
IEEE Trans. Biomed. Eng., 1994

1993
Simultaneous detection of both coronary borders.
IEEE Trans. Medical Imaging, 1993

1989
Cognitive Robot Education and Image Processing Research at the Czech Technical University of Prague.
Proceedings of the Artificial Intelligence in Higher Education, 1989


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